Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1392 ATGAATGGGGAACATGAACTGAAAGATGAAGATGATGCTGATGAAGGGGAGAACCTTCCTCCTGGCTCCTATGAGATCTTACAGCTAGAAAAGGAAGAAATCCTTGCACCTCACACCCACTTCTGCATGATATGTGGTAAGGGATTCAAGAGGGATGCGAATTTGAGGATGCACATGAGAGGTCATGGTGATGAATACAAAACTCCAGCAGCTCTTGCAAAACCCAACAAGGAATCCAGCTCTGAGCCAGTGCTTATTAAGAGGACTCATTGCGACAAAAGCTACACTTGCAGCAGGTGCAACACCAAGAAGTTCTCAGTTATTGCTGATCTTAAAACTCATGAGAAGCATTGTGGCAAGGATAAGTGGCTTTGTTCCTGTGGAACCACTTTCTCAAGAAAAGACAAGCTTTTTGGGCATATTGCTCTCTTCCAAGGCCACACTCCTGCTATTCCCCTTGATGAAACTAAAGGATCTGTTGGGCCATCTGACCGTGGGGAAGGCAATGGAGCAGCAAATAAGGTTGGAAGTGTGGGGTTCAACTTCAGTTCAAATGCTTCAAGTGGAAGTGGAGTTCAAGATATGATGATGGATGTAAAAAGGGGTGCTGACGAGCCTACTGGTTTTTTCTCACCATTGACCTTTGATCCTTGTAGTCTCGTTGGGTTTCACGAGTTCCCTCGACCCCCATTTGAAGACTCAGAAAGTTCATTCTCTTTTCTTGTCCCAGGGTCTTGTAGCTATACAAGAAAGACTGGAGGCGAGTCTAGTTCTAATGATCTTGAGTAG 789 44.99 MNGEHELKDEDDADEGENLPPGSYEILQLEKEEILAPHTHFCMICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESSSEPVLIKRTHCDKSYTCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGSVGPSDRGEGNGAANKVGSVGFNFSSNASSGSGVQDMMMDVKRGADEPTGFFSPLTFDPCSLVGFHEFPRPPFEDSESSFSFLVPGSCSYTRKTGGESSSNDLE* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20207846 20209652 - Vvi18g1392 Vvi18g1392 781095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1392 262 Pfam Zinc finger, C2H2 type 41 62 IPR013087 -
Vvi18g1392 262 Gene3D Classic Zinc Finger 41 65 - -
Vvi18g1392 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Vvi18g1392 262 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Vvi18g1392 262 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g1392 262 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 87 245 IPR044300 GO:0010044|GO:0010447
Vvi18g1392 262 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 3 88 IPR044300 GO:0010044|GO:0010447
Vvi18g1392 262 Gene3D Classic Zinc Finger 66 151 - -
Vvi18g1392 262 SUPERFAMILY beta-beta-alpha zinc fingers 39 116 IPR036236 -
Vvi18g1392 262 SMART c2h2final6 40 62 IPR013087 -
Vvi18g1392 262 SMART c2h2final6 95 117 IPR013087 -
Vvi18g1392 262 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 87 245 - -
Vvi18g1392 262 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 3 88 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14286 PF00096 zf-C2H2 0.00031 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1392 - - vvi:100248677 493.812