Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1392 | ATGAATGGGGAACATGAACTGAAAGATGAAGATGATGCTGATGAAGGGGAGAACCTTCCTCCTGGCTCCTATGAGATCTTACAGCTAGAAAAGGAAGAAATCCTTGCACCTCACACCCACTTCTGCATGATATGTGGTAAGGGATTCAAGAGGGATGCGAATTTGAGGATGCACATGAGAGGTCATGGTGATGAATACAAAACTCCAGCAGCTCTTGCAAAACCCAACAAGGAATCCAGCTCTGAGCCAGTGCTTATTAAGAGGACTCATTGCGACAAAAGCTACACTTGCAGCAGGTGCAACACCAAGAAGTTCTCAGTTATTGCTGATCTTAAAACTCATGAGAAGCATTGTGGCAAGGATAAGTGGCTTTGTTCCTGTGGAACCACTTTCTCAAGAAAAGACAAGCTTTTTGGGCATATTGCTCTCTTCCAAGGCCACACTCCTGCTATTCCCCTTGATGAAACTAAAGGATCTGTTGGGCCATCTGACCGTGGGGAAGGCAATGGAGCAGCAAATAAGGTTGGAAGTGTGGGGTTCAACTTCAGTTCAAATGCTTCAAGTGGAAGTGGAGTTCAAGATATGATGATGGATGTAAAAAGGGGTGCTGACGAGCCTACTGGTTTTTTCTCACCATTGACCTTTGATCCTTGTAGTCTCGTTGGGTTTCACGAGTTCCCTCGACCCCCATTTGAAGACTCAGAAAGTTCATTCTCTTTTCTTGTCCCAGGGTCTTGTAGCTATACAAGAAAGACTGGAGGCGAGTCTAGTTCTAATGATCTTGAGTAG | 789 | 44.99 | MNGEHELKDEDDADEGENLPPGSYEILQLEKEEILAPHTHFCMICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESSSEPVLIKRTHCDKSYTCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGSVGPSDRGEGNGAANKVGSVGFNFSSNASSGSGVQDMMMDVKRGADEPTGFFSPLTFDPCSLVGFHEFPRPPFEDSESSFSFLVPGSCSYTRKTGGESSSNDLE* | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 20207846 | 20209652 | - | Vvi18g1392 | Vvi18g1392 | 781095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1392 | 262 | Pfam | Zinc finger, C2H2 type | 41 | 62 | IPR013087 | - | |
Vvi18g1392 | 262 | Gene3D | Classic Zinc Finger | 41 | 65 | - | - | |
Vvi18g1392 | 262 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 40 | 67 | IPR013087 | - | |
Vvi18g1392 | 262 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 42 | 62 | IPR013087 | - | |
Vvi18g1392 | 262 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Vvi18g1392 | 262 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 87 | 245 | IPR044300 | GO:0010044|GO:0010447 | |
Vvi18g1392 | 262 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 3 | 88 | IPR044300 | GO:0010044|GO:0010447 | |
Vvi18g1392 | 262 | Gene3D | Classic Zinc Finger | 66 | 151 | - | - | |
Vvi18g1392 | 262 | SUPERFAMILY | beta-beta-alpha zinc fingers | 39 | 116 | IPR036236 | - | |
Vvi18g1392 | 262 | SMART | c2h2final6 | 40 | 62 | IPR013087 | - | |
Vvi18g1392 | 262 | SMART | c2h2final6 | 95 | 117 | IPR013087 | - | |
Vvi18g1392 | 262 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 87 | 245 | - | - | |
Vvi18g1392 | 262 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 3 | 88 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14286 | PF00096 | zf-C2H2 | 0.00031 | CL0361 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1392 | - | - | vvi:100248677 | 493.812 |