Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1394 ATGCTTCTCCAAATCCAATCCACTATTTCATCTCCACCACCTCTCCAGAACCACCATCCCCGCCATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAGGTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGATCATGGGCTGGATGTCACTGAATCTCCTATATTGCAGATATTTGGAAGGGAAGTAGCAATAAAATCATTGACTTCAAGAAATCTTAAAGGATTCTTGACTAACATTTTGGCTTTTGAGGATGCTACAAATGCAAAAAGGCCACTGATTGCTGTATCTGCACTTTCATGTGGAGTAGCCTCGTGGTTGACTTCTGCACAAGTTGCACACTCAAGTGAAGATGTCAAAATGAATGTAGTCTATGAGGTTGGGGAGTTGTTTGAATTGGGGATTCAGCTTTCTTACCTTCTTTTACTGTTAGGTTTGATTGGAGTTGGAACCTTTTTTGTGATTCGTCAAGTCCTTGTTCGTAGAGAACTTGACCTTTCTGCTAAAGAATTGCAAGAGCAAGTAAGAAGTGGTGATGCCAGTGCAACTGAACTGTTTGAACTTGGAGCAGTGATGTTGCGGAGGAAATTTTATCCAGCTGCTACTAAATTCTTGCTTCAGGCAATTGAGAAATGGGATGGAGATGATCAAGATCTTGCCCAGGTTTACAACGCACTTGGTGTCAGTTATGTTCGTGATGGGAAGCTTGAAAAGGGAATCACTCAGTTTGAGAATGCCGTGAAACTTCAACCAGGCTATGTCACAGCCTGGAACAACCTTGGTGATGCTTATGAGAAGAAGAAAGACTTAAAGTCTGCTCTTAAGGCATTTGAAGAAGTGCTTCTTTTCGATCCTAACAATAAGGTGGCACGACCTCGGAGAGATGCGTTGAAGGATCGTGTTCAATTGTACAAAGGAGTAGTTCCCACTCAACCAAAGGAGAGATGA 978 43.25 MLLQIQSTISSPPPLQNHHPRHSSSGSRNWRPYRLALEVTTQRCSAPTSATSVTDHGLDVTESPILQIFGREVAIKSLTSRNLKGFLTNILAFEDATNAKRPLIAVSALSCGVASWLTSAQVAHSSEDVKMNVVYEVGELFELGIQLSYLLLLLGLIGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRKFYPAATKFLLQAIEKWDGDDQDLAQVYNALGVSYVRDGKLEKGITQFENAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVQLYKGVVPTQPKER* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20224368 20234931 - Vvi18g1394 Vvi18g1394 781097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1394 325 SMART tpr_5 264 297 IPR019734 GO:0005515
Vvi18g1394 325 SMART tpr_5 230 263 IPR019734 GO:0005515
Vvi18g1394 325 ProSiteProfiles TPR repeat region circular profile. 230 261 - -
Vvi18g1394 325 SUPERFAMILY TPR-like 189 301 IPR011990 GO:0005515
Vvi18g1394 325 Pfam Tetratricopeptide repeat 235 294 - -
Vvi18g1394 325 Gene3D Tetratricopeptide repeat domain 176 312 IPR011990 GO:0005515
Vvi18g1394 325 PANTHER TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN PYG7, CHLOROPLASTIC 20 317 - -
Vvi18g1394 325 ProSiteProfiles TPR repeat region circular profile. 264 297 - -
Vvi18g1394 325 ProSiteProfiles TPR repeat profile. 264 297 IPR019734 GO:0005515
Vvi18g1394 325 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 20 317 - -
Vvi18g1394 325 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g1394 325 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1394 - - - vvi:100243534 613.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1394 . . . . . . . . . . . Cma09g01145 . . . . . . . . . . . . . . . . . . . Cone4ag1225 Cone7ag0911 . . . . . . . . . . . . . . . . Cmo09g01156 . . . Car09g01039 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008865 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33