Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1396 ATGGGGTTTGTTACTGGGCAACTTATTCAGCCTTATAGGGATAGACCTAATGAGGGGACGCTTTCAATTTATACTGAATTCTCTCCCATGGCTGATCCTTCTTTTGAGGCTGGACGTCCCGGAGAAGCTGCAGTGGAGTTGGGACGGGTAATAGACCGCGGTTTAAGGGAAAGCAGGGCAGTGGATATGGAATCACTTTGTGTTCTTGCTGGCAAGTTGGTATGGTCTATCCGAATTGATCTCCACATTATTGATAATGGGGGAAATCTTATTGATGCCGCTAATATTGCTGCTTTGGCTGCTCTGTTGACATTTCGAAGGCCTGAATGTTCATTCGGAGGGGAAGATGGTCAGGAACTGATAGTACATCCACCTGAGGTGAGGGAGCCACTTCCTTTGATTGTACATCATCTCCCAATAGCAGTGACCTTTGCAATTATTGGGAATGAGAACATTATGGTGATAGATCCAACCCACAGTGAAGAGGCTGTTATGGGTGGAAGAATGACTGCTACACTTAATACAAATGGTGATGTCTGTGCTATTCAAAAAGCTGGAGGAGAGGGTATCATTCAGAGTGTTATCATGCAGTGCTTGCGAATTGCTTCAGTGAAGGCTGCTGATATAACAAGCAAGATAAAAAATGCAGTTGAAGCATTCAACACAGAAAGAGCATTGCGGAAGATCAAGCGCCACTCTTCTTCCATAGCTGTGGATGTTAGTGGACCAGGTGCTAAAATGAGGGAGAACAAAAATCAATCTGTTGATGAGAAGGTAGTCAATGAGTTATCAAGCCATCACATGGAGAGGTTGAAGATGGAATCAGAAGAAAGCTGTGTCACTCAGAGCAGTGATGTGGAAGTTAAAACCCAATTATCTGAACAAGGAAGAACTAACAGGAGTGATGAGAACACCAGAAGTTTCATTGGTGGCCCCTCAAGTTGGGATCCATACTCGAAGGGCATTGATTCGGATTTCCTGAAAGCTTCTCTAGCTTCACATGGATTGATAAAACAGAACACAAAACAAAAAGATTCAAGAGGTGAAATGAAGGCCCCTGACGTAAAGTCAGAGGAACCAAATGCTGATATTGATCCAGCTCTTTGTCCAATGAAAACTGTTGGAACCACACCCCAAACAAATGGAGAGAAGACATTGAAGGATGCAGTAAAGCCTAAGAACAAGAGAAAGAAGAAGGCATCCCCCAACACTAATGCAAGGTAG 1224 43.71 MGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEAAVELGRVIDRGLRESRAVDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVHPPEVREPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVCAIQKAGGEGIIQSVIMQCLRIASVKAADITSKIKNAVEAFNTERALRKIKRHSSSIAVDVSGPGAKMRENKNQSVDEKVVNELSSHHMERLKMESEESCVTQSSDVEVKTQLSEQGRTNRSDENTRSFIGGPSSWDPYSKGIDSDFLKASLASHGLIKQNTKQKDSRGEMKAPDVKSEEPNADIDPALCPMKTVGTTPQTNGEKTLKDAVKPKNKRKKKASPNTNAR* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20255698 20261741 + Vvi18g1396 Vvi18g1396 781099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1396 407 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE, PNPASE/RNASE PH DOMAIN PROTEIN-RELATED 1 253 - -
Vvi18g1396 407 MobiDBLite consensus disorder prediction 274 315 - -
Vvi18g1396 407 MobiDBLite consensus disorder prediction 337 407 - -
Vvi18g1396 407 Pfam 3' exoribonuclease family, domain 1 4 108 IPR001247 -
Vvi18g1396 407 MobiDBLite consensus disorder prediction 277 312 - -
Vvi18g1396 407 SUPERFAMILY Ribosomal protein S5 domain 2-like 3 163 IPR020568 -
Vvi18g1396 407 Gene3D - 2 239 IPR027408 -
Vvi18g1396 407 SUPERFAMILY Ribonuclease PH domain 2-like 133 234 IPR036345 -
Vvi18g1396 407 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 1 253 - -
Vvi18g1396 407 CDD RNase_PH_RRP45 1 211 IPR033100 GO:0000178|GO:0006396
Vvi18g1396 407 MobiDBLite consensus disorder prediction 391 407 - -
Vvi18g1396 407 Pfam 3' exoribonuclease family, domain 2 137 203 IPR015847 -
Vvi18g1396 407 MobiDBLite consensus disorder prediction 340 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1396 K03678 RRP45, EXOSC9; exosome complex component RRP45 - vvi:100265860 775.393
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003214 0 5 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 13 3 1 50