Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1398 ATGAGTCTCAAAAAAGATGAGGCATATCGTTGGATGAGCGAAGAGGATGAATCATGTATCCAAGCTATGCTTTTTGCTAGCTCACATGTGTTCCCCACGATCTTGAACACTGCGGTTGAGCTAAACCTGTTTGAGATCATCGCTCGAGCAGGCCCTGGTGCTTATGTCTCACCCTCTGAGATCGCATCCCAGCTTCCCACCCAAAACCCCAATGCACCTTGTTTTATGGATCGGATGCTGCGTCTATTTGCTAGTCACGGGCTTCTATCTTACAGCCTGCGCACACTCGAAGATGGCAGAGTTGATAGGCTTTATGGTCTCACTCCCGTTTGTAAATTCTTTCTTAGGAGTGATGATGGGAGTTGTTTGGCTTCCTTATCGACCCTGGGTTCCCACCGAGCTATGAGGGAAGTTTGGCCACACTTGAAGGACGCCATTCTTAAAGGTGGTAATCAATTCCAGAAAGTCCACGGGATGAGTATGTTTGAGTACATGGACAAGGACCCGACACTAAACAAGGCCTTCAATGAGGCAATGGTTGGTCGCTCCACCATAATCATGAAGAAAATCGTGGAGACCTACCAGGGGTTTGAGGGATTAGCATCACTTGTGGACGTGGGCGGTGGAACCGGTGCAAACCTTAACATGATCATTTCCAAGTATCCTTCCATCAAAGGCATCAACTTTGATTTGCCACATGTTGTGCAAACTGCACCAACTTATCCGGAGAGAGGAATATTAGAGCAACAAAGTATGAGTCTCAAAAAAGATGAGGCATATCGTTGGATGAGCGAAGAGGATGAATCATGTATCCAAGCTATGCTTTTTGCTAGCTCACATGTGTTCCCCACGATCTTGAACACTGCGGTTGAGCTAAATCTGTTTGAGATCATCGCTCGAGCAGGCCCTGGTGCTTATGTCTCACCCTCTGAGATCGCATCCCAGCTTCCCACCCAAAACCCCAATGCACCTTGTTTTATGGATCGGATGCTGCGTCTATTTGCTAGTCACGGGCTTCTATCTTACAGCCTGCGCACACTCGAAGATGGCAGAGTTGATAGGCTTTATGGTCTCACTCCCGTTTGTAAATTCTTTCTTAGGAGTGATGATGGGAGTTGTTTGGCTTCCTTATCAACCGTGGGTTCCCACCGAGCTTTGAGGGAAGTTTGGCCATCCTTGAAGGACGCCATTCTTGAAGGAGGTGATCAATTCCAGAAAGTCCACGGGATGAGTATGTTTGAGTACATGGACAAGGACCCGACACTAAACAAGGCCTTCAATGAGGCAATGGTTGGTCGCTCCACCATAATCATGAAGAAAGTCGTGGAGACCTACCAGGGGTTTGAGGGATTAGCATCACTTGTGGACGTGGGCGGTGGAACCGGTGCAACCCTTAACATGATCATTTCCAAGTATCCTTCCATCAAAGGCATCAACTTTGATTTGCCACATGTTGTGCAAACTGCACCAACTTATCCGGGTATTGAGCATGTAGGAGGAAGCATGCTAGTTAGCATTCCAAAAGCAGACGCAATTATGATTAAGGATACATGCCATAACTGGAGTGATGAACATTGCTTAAAATTTTTACGCAATTGTTATGAATCGTTACCGAAAAATGGGAAGGTGATAGTGATAGACATAATAATGCCAGAAGCACCAGAGCCAAGCATTGGCTCTCAGTATGTTGCTCGGCTCGACAATGTCATGTTACTGCTACACGGAGGCAAAGAGAGGACTGCCAGAGAGTTCGAGGCCTTGTGCAAGGGTTCTGGGTTTTCAGACTTCCGAGTGGCTTGTTGTGTTTACAGTTGCCTTTCTGCGGTCATGGAATTTCAGAAATAA 1845 46.78 MSLKKDEAYRWMSEEDESCIQAMLFASSHVFPTILNTAVELNLFEIIARAGPGAYVSPSEIASQLPTQNPNAPCFMDRMLRLFASHGLLSYSLRTLEDGRVDRLYGLTPVCKFFLRSDDGSCLASLSTLGSHRAMREVWPHLKDAILKGGNQFQKVHGMSMFEYMDKDPTLNKAFNEAMVGRSTIIMKKIVETYQGFEGLASLVDVGGGTGANLNMIISKYPSIKGINFDLPHVVQTAPTYPERGILEQQSMSLKKDEAYRWMSEEDESCIQAMLFASSHVFPTILNTAVELNLFEIIARAGPGAYVSPSEIASQLPTQNPNAPCFMDRMLRLFASHGLLSYSLRTLEDGRVDRLYGLTPVCKFFLRSDDGSCLASLSTVGSHRALREVWPSLKDAILEGGDQFQKVHGMSMFEYMDKDPTLNKAFNEAMVGRSTIIMKKVVETYQGFEGLASLVDVGGGTGATLNMIISKYPSIKGINFDLPHVVQTAPTYPGIEHVGGSMLVSIPKADAIMIKDTCHNWSDEHCLKFLRNCYESLPKNGKVIVIDIIMPEAPEPSIGSQYVARLDNVMLLLHGGKERTAREFEALCKGSGFSDFRVACCVYSCLSAVMEFQK* 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20311698 20316360 + Vvi18g1398 Vvi18g1398 781101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1398 614 Gene3D Vaccinia Virus protein VP39 116 256 IPR029063 -
Vvi18g1398 614 PANTHER PUTATIVE-RELATED 15 242 - -
Vvi18g1398 614 PANTHER PUTATIVE-RELATED 264 614 - -
Vvi18g1398 614 Pfam O-methyltransferase domain 390 594 IPR001077 GO:0008171
Vvi18g1398 614 Pfam O-methyltransferase domain 139 242 IPR001077 GO:0008171
Vvi18g1398 614 Gene3D Vaccinia Virus protein VP39 367 614 IPR029063 -
Vvi18g1398 614 Pfam Dimerisation domain 34 84 IPR012967 GO:0046983
Vvi18g1398 614 Pfam Dimerisation domain 285 335 IPR012967 GO:0046983
Vvi18g1398 614 PANTHER O-METHYLTRANSFERASE 15 242 IPR016461 GO:0008168
Vvi18g1398 614 PANTHER O-METHYLTRANSFERASE 264 614 IPR016461 GO:0008168
Vvi18g1398 614 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 378 604 IPR029063 -
Vvi18g1398 614 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 243 IPR029063 -
Vvi18g1398 614 Gene3D - 257 365 IPR036388 -
Vvi18g1398 614 Gene3D - 2 114 IPR036388 -
Vvi18g1398 614 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 274 614 IPR016461 GO:0008168
Vvi18g1398 614 SUPERFAMILY Winged helix DNA-binding domain 14 117 IPR036390 -
Vvi18g1398 614 CDD AdoMet_MTases 454 550 - -
Vvi18g1398 614 SUPERFAMILY Winged helix DNA-binding domain 265 368 IPR036390 -
Vvi18g1398 614 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 243 IPR016461 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1398 K13066 - vvi:100260649 736.102