Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1399 ATGCCTGTAAAACAGGCCAGCGAGGTCCAGGAACGCCTAACTGGAGACTCATTCATCCGACCCCATCTCAAGAATTTGTCACCTTATCAACCCATTTTGCCTTTTGAGGTTTTGTCATCACGTCTTGGCAGGAAGCCTGAAGATATTGTCAAGCTAGATGCAAATGAAAACCCTTACGGTCCACCCCCAGAGGTATTTGAAGCTTTGGGGTCATTGAAATTCCCATATGTTTATCCTGACCCTGAAAGCCGTCGATTACGAGGTGCACTTGCAGAAGATTCAGGCATTGAGTCTGATTATATTCTTGCCGGATGTGGTGCAGATGAGCTCATTGATTTGATTATGCGATGTGTACTGGATCCTGGTGACAAGATTGTGGATTGTCCGCCAACTTTCACAATGTATGAATTTGATGCTGCTGTTAATGGGGCACTTGTTCTCAAAGTACCGAGGAATTCAGACTTCAGTCTGAATTTAGAGGCCATTGCTGATGTTGTTGAGAAGGAGAAACCAAAATGCATATTCCTAACTTCTCCCAACAACCCAGATGGAAGTATTATCAATGATGAAATTCTCTTGAAGATCCTTGAACTGCCTATTTTGGTCGTGCTGGATGAAGCATACATTGAATTTTCAGGAATTAAGTCTAGGATGGGATGGGTGAAGAAGTTTGAGAATTTAATTGTCCTGAGGACATTTAGCAAAAGAGCTGGATTAGCTGGACTCCGTGTGGGGTATGGAGCATTTCCTTTGAGCATTATTGAGTATCTTTGGAGAGCAAAGCAACCATATAATGTTTCTGTTGCTGCTGAAGTTTCTGCATGTGCAGCATTGCAGAATCCCGCCTATTTGGAGAAGGTGAAAGAAGCTTTGGTACAAGAGCGGGGTAGGCTGTATAAGCTTCTGAAAGAAGTGCCATTTCTCAACCCATTTCCAAGCTATTCTAATTTCATTCTTTGTGAAGTTACATCTGGTATGGATGCTAAGAAGCTAAAGGATGATCTTGCAAAAAAGGGCGTGATGATCCGTCACTACAGTAACAAAGAATTGAAGGGATATGTTCGTGTCTCTGTTGGGAAGCCTGAACACACAGACGCCTTGATGGCGTGCCTCAATTCCCTATCTTGA 1128 43.09 MPVKQASEVQERLTGDSFIRPHLKNLSPYQPILPFEVLSSRLGRKPEDIVKLDANENPYGPPPEVFEALGSLKFPYVYPDPESRRLRGALAEDSGIESDYILAGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGALVLKVPRNSDFSLNLEAIADVVEKEKPKCIFLTSPNNPDGSIINDEILLKILELPILVVLDEAYIEFSGIKSRMGWVKKFENLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVSACAALQNPAYLEKVKEALVQERGRLYKLLKEVPFLNPFPSYSNFILCEVTSGMDAKKLKDDLAKKGVMIRHYSNKELKGYVRVSVGKPEHTDALMACLNSLS* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20331032 20346348 - Vvi18g1399 Vvi18g1399 781102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1399 375 CDD AAT_like 50 364 - -
Vvi18g1399 375 Gene3D - 78 279 IPR015421 GO:0003824
Vvi18g1399 375 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED 4 374 - -
Vvi18g1399 375 SUPERFAMILY PLP-dependent transferases 28 372 IPR015424 -
Vvi18g1399 375 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE 4 374 - -
Vvi18g1399 375 Gene3D Aspartate Aminotransferase, domain 1 47 368 IPR015422 GO:0003824
Vvi18g1399 375 Pfam Aminotransferase class I and II 48 367 IPR004839 GO:0009058|GO:0030170
Vvi18g1399 375 TIGRFAM hisC: histidinol-phosphate transaminase 20 373 IPR005861 GO:0000105|GO:0004400
Vvi18g1399 375 Hamap Histidinol-phosphate aminotransferase [hisC]. 18 375 IPR005861 GO:0000105|GO:0004400
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1399 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] - vvi:100255576 728.398
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1399 . . . . . . . . . . . Cma09g01142 . . . . . . . . . . . . . . . . . . . Cone4ag1222 Cone7ag0913 . . . . . . . . . . . . . . . . Cmo09g01152 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003567 1 1 1 1 1 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 1 3 2 1 46