Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1401 ATGGCTGCTGCGTATTCCCTCATTTCTACATTCTTCTCCAACTCTCCTTCCCCTTCCACCGCATTTTCTCGCTCCCCAAACACAAAATCTATTTTCTCCCTCTCCAGACATCGGGTGTGCCTCCATCGGAGCCCTAATCTCACCACCTTCGCCCTCCACAACCACCACAACCATTCCTCCCAAGCCCCGCTCTCCTCCGCCCTTGATTCTCTCCTCGTCCTCTGCACCTCCGTCGCTCTCTCCTTCTCTCTCTTCGTCGCCGATGTTGACTCCGCCTCCGCATTTGTGGTCACAGCTCCCCGAAAATTGCAGAACGATGAGCTCGCTACTGTTCGGCTGTTTCAGGAGAATACGCCATCTGTTGTCTACATCACCAACCTCGCTGCCAGGCAGGATGCATTCACATTGGATGTGTTGGAAGTGCCGCAGGGGTCTGGTTCAGGTTTTGTGTGGGATAAGGATGGTCACATTGTCACAAATTATCATGTAATTCGCGGTGCATCTGATCTCAGGGTTACTCTTGCTGACCAGACAACTTATGATGCAAGAGTCGTTGGATTTGACCAAGACAAAGATGTTGCTGTTTTGCGTGTTGATGCACCAAAGGAGAAGCTGAGACCCATACCTGTTGGTGTCTCTGCAGACTTGCTTGTTGGCCAGAAAGTCTATGCTATTGGGAATCCGTTTGGACTTGATCATACTCTTACAACTGGTGTTATCAGTGGGCTTAGGAGGGAAATCAGTTCTGCTGCTACGGGCCGTCCAATTCAGGATGTTATACAGACGGATGCTGCTATTAATCCTGGTAATAGTGGAGGACCACTTCTTGATAGTTCGGGAAGCCTTATCGGGATAAATACAGCTATATATTCTCCCTCTGGTGCATCTTCTGGTGTCGGATTTTCAATTCCAGTTGACACTGTAAGCGGCATTGTCGACCAATTGGTGAGGTTTGGAAAAGTCACAAGACCTATTTTAGGAATTAAGTTTGCGCCTGATCAGTCTGTGGAGCAGTTGGGTGTAAGTGGGGTCCTTGTTTTAGATGCTCCTGCAAACGGTCCTGCTGGCAAAGCGGGCCTACTACCAACCAAACGTGATGCCTATGGCAGACTTATTTTAGGTGACATCATAACATCGGTGAATGGAAAAAAGGTTTCCAATGGAAGCGACTTGTACAGAATTCTTGACCAGTGTAAAGTGGGTGACACGGTGACTGTGGAGGTGTTGCGCGGTGACCACATAGAGAAAATCCCTGTACTCCTTGAGCCAAAGCCCGACGAGTCTTAA 1287 48.95 MAAAYSLISTFFSNSPSPSTAFSRSPNTKSIFSLSRHRVCLHRSPNLTTFALHNHHNHSSQAPLSSALDSLLVLCTSVALSFSLFVADVDSASAFVVTAPRKLQNDELATVRLFQENTPSVVYITNLAARQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQTTYDARVVGFDQDKDVAVLRVDAPKEKLRPIPVGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGSLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVRFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPANGPAGKAGLLPTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDTVTVEVLRGDHIEKIPVLLEPKPDES* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20396917 20422554 + Vvi18g1401 Vvi18g1401 781104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1401 428 Gene3D - 92 208 IPR043504 -
Vvi18g1401 428 ProSiteProfiles PDZ domain profile. 315 412 IPR001478 GO:0005515
Vvi18g1401 428 SUPERFAMILY PDZ domain-like 282 412 IPR036034 GO:0005515
Vvi18g1401 428 Gene3D - 209 323 IPR043504 -
Vvi18g1401 428 PRINTS HtrA/DegQ protease family signature 155 167 IPR001940 GO:0004252|GO:0006508
Vvi18g1401 428 PRINTS HtrA/DegQ protease family signature 176 196 IPR001940 GO:0004252|GO:0006508
Vvi18g1401 428 PRINTS HtrA/DegQ protease family signature 218 242 IPR001940 GO:0004252|GO:0006508
Vvi18g1401 428 PRINTS HtrA/DegQ protease family signature 256 273 IPR001940 GO:0004252|GO:0006508
Vvi18g1401 428 PRINTS HtrA/DegQ protease family signature 278 295 IPR001940 GO:0004252|GO:0006508
Vvi18g1401 428 PRINTS HtrA/DegQ protease family signature 370 382 IPR001940 GO:0004252|GO:0006508
Vvi18g1401 428 SMART pdz_new 324 412 IPR001478 GO:0005515
Vvi18g1401 428 Pfam PDZ domain 324 420 IPR001478 GO:0005515
Vvi18g1401 428 PANTHER PROTEASE DO-LIKE 1, CHLOROPLASTIC 44 428 - -
Vvi18g1401 428 Pfam Trypsin-like peptidase domain 146 285 - -
Vvi18g1401 428 PANTHER SERINE ENDOPROTEASE DEGS 44 428 - -
Vvi18g1401 428 SUPERFAMILY Trypsin-like serine proteases 112 315 IPR009003 -
Vvi18g1401 428 Gene3D - 324 428 IPR036034 GO:0005515
Vvi18g1401 428 CDD PDZ_serine_protease 324 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1401 K25895 DEGP1; protease Do-like 1, chloroplastic [EC:3.4.21.-] K25894 vvi:100241896 793.112
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1401 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007600 2 2 2 2 1 1 2 0 1 1 1 0 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36