Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1402 ATGGAGAAGCTATCTCGGAGCGTCTCAGTCTGGGGAAATGAAAAGGAGCCAAACCCATGTGCATGGAAGGGAGTTTCATGCAGCTCCGACAACTCCTCAATAGCCAATCTTTCCCTCTCGGGATTGTTGGTCGGTTCTTTGCCTGCTTTTAATGGCTTTGTTGGGTTAGAGTCGTTGGATTTTTCCAGTAACATGTTGAATGGAACAATTGTTTCACAGTTAGGGTCATTGAATGATCTAAAAAGATTGTACCTTACGTCCAATAATTTGAGTGGTAATGTTCCCATCAACCTTGGAAATTCCAAGGTGTTAGAGCATCTTATTCTTTCCAAGAATTCCTTCACTGGTAGTATTCCTGATGGGCTCCTAGAATATCGGAAGTTGGTTCGGATTGATTTGAGTGAAAATCAACTTTCTGGGCCTTTACCTGGGAAAATTGGAGACCTTTCCGAGCTGGAAGAGTTGACTCTGTCTTCCAATAATTTGAGTGGAGAAATCCCAATGAACCTTTCAAATTTCCAAAATCTTTTGAGATTCGCCGCGAATCAGAACAAGTTCACAGGCAATATTCCAGTTGGAATTTCAAGATCTCTCAAGAACTTGGATCTTATGGATCTTTCTTACAATCTGCTAGAGGGATCAATACCTGCAAAAATATCTCCAAACATGGTTAGGTTGAGATTAGGAAGCAATTCACTTGATGGTACTATCCCATCTGAACTTGGAACGCTACCGAAATTGACTTACTTGGAGCTGGAAAACAATAGCTTGTCGGGATCCATCCCTTCCAAGTTGGGTTCTTGCCGGAGTTTGGCGCTGTTGAATCTGGGAATGAATAACTTGACTGGCAGTCTGCCTGTGGAGTTGGCTAGTCTTAGCAGTCTTCAAGTTCTGAAGCTTCAGTCCAACAAGCTGGTTGGTGAGATCCCATATCAGATGAACCAAATGCAAAGTTTGTCCACTCTGGATATTAGTGGGAATTTGCTTAGTGGTTCAATCCCAAATTCAATTTCAAGGTTGCGGAGTCTCACCAAGTTGAACTTACAAGGCAACCTTTTCAATGGTTCAATACCTGCAACAATTGACAGCTTGAAGAATCTGTTAGAACTTCAGCTTGGAAGCAATCGACTGAATGGCCATATTCCAGGGATGCCACTTAGCTTGCAGATTGCTTTGAATCTCAGCCACAACCTCTTCGAAGGAACTATCCCTGATACTCTCTCTCGTTTGCGGGGTTTAGAAGAGTCTTCTGAGTGCCAGAGAAAGATGAGGAGCCATGAGCAGAGGGTCTATTTCTTCTTCTTCTTCTTGTCTTCTGTTCCTTTTGTGCTGTCTCTGTCTTCGACTCAGAAAGAAATCATGGAGAAGCTATCTCGGAGCGTCTTAGTCTGGGGAAATGAAAAGGAGCCAAACCCATGTGCATGGAAGGGAATTGATGGGTTGAAGCAGCTGAATTTCAGTAAGAACAGGTTGGTCGGTTCTTTGCCTGCTTTTAATGGCTTTGTTGGGTTAGAGTCGTTGGATTTTTCCAAATATCGGAAGTTGGTTCGGATTGATTTGAGTGAAAATCAACTTTCTGGGCCTTTACCTGGGAAAATTGGAGACCTTTCCAAGCTGGAAGAGTTGATTCTGTCTTCCAATAATTTGAGTGGAGAAATCCCTATGAACCTTTCAAATTTCCAAAATCTTTTGAGATTCGCCGCGAATCAGAACAAGTTTATAGGCAATATTCCAGTTGGAATTTCAAGATCTCTCAAGAATTTGGATCTTAGTTATAATAAATTAGGTGGGCAAATTCCAACTGACCTTTTGATGCAGTCAAATTTGCAGACAGTGGATCTTTCTTACAATCTGCTAGAGGGATCAATACCTGCAAAAATATCTCCAAACATGGTTAGTTTGGCGCTGTTGAATCTGGGAATGAATTACTTGACTGGCAGTCTGCCTGTGGAGTTGGCTAGTCTTAGCAGTCTTCAAGTTCTGAAGCTTCAGTCCAACAAGCTGGTTGGTGAGATTCCATATCAGATTAGCCAAATGCAAAGTTTGTCCATTCTGAATATTAGTGGGAATTTGCTTAGTGGTTCAATCCCAATTTCAATTTCAAGGTTGCAGAATCTCACCAACTTGAACTTACAAGGCAACCGTCTCAGTGGTTCAATACCTGCAACAATTGACAGCTTGAAGTATCTGTTAGAACTTCAGCTTGGAAACAATCAACTGAATGGCCATATTCCAGGGATGCCACTTAGCTTGCAGATTGCTTTGAATCTCAGCCACAACCTCTTTGAAGGAGCTATCCCTGAGACTCTCTCTCGTTTGCAGGGTTTAGAAGTATTGGATCTCTCAAACAACAAATTCTCAGGTGCAATTCCAACTTCTCTGACACGAATTGGATCACTGACACAACTGCTACTTGCAAATAATCAGCTGTCTGGAGTGATTCCGGAGTTTGGAAAATATGTTACCATCATTGATACAACGGGTAATCCAAGGCTAGTTAACAGAACATTACAACGTAACTCTCCCCAGAGTTTTCCAGGCAAGAGGAAGGTGAAGGATGAACCATTAGGAGCAACAGAAGACCTCCCACCCCCTCAGGTGGTCCAAGGAAATCTTTTAACTGCAAATGCTATCCATAGGTCAAATATTGACTTCACCAAAGCCATGGAAGCTGTAGCTAGCACATCAAACATCTTGCTCAAGACAAGGTTTTCAACCTACTACAAAGCTGTCATGCCTTCTGGAAGAAGTTATTTCATCAAGAAGATTAACTGGAGTGACAAGATATTCCAATTAGGCAGCCATGAGAAGTTCGGTCAAGAGCTAGAGATCTTGGGAAAGCTGAGCAATTCGAATGTCATGATGCCACTGGCCTATGTTCTGACTGTTGATAGTGCCTATCTCTTCTATGAATATGCCCAGAAGGGTACCCTTTTTGATATCCTTCATGGCAGCTTTGGAAGTGCTCTGGATTGGGCAAGCCGTTACAGCATTGCAGTGGGAATAGCTCAGGGTTTGGCTTTTCTCCATGGATACACCTCTGGTCCGGTTCTCCTCCTTGATCTGTCCAGCAAAAGCATTATGCTGAAGTCAGTGAAGGAACCTCAAATCGGGGACATTGAACTCTATAAGGTGATTGATCCATCCAAGAGCACTGGTAGCGTTTCTACAGTGGCTGGCTCTGTTGGCTACGTACCTCCAGAGTACGCATACACAATGAGGGTAACTATGGCTGGGAATGTCTACAGTTTTGGGGTCATTCTGCTGGAATTGCTGACAGGAAAGCCTCCCGTCAGCGAGGGAACTGAGCTAGCGAGGTGGGTGTTGAACAACACAGCACAGCGAGACAAGTGGGATCGCATCCTTGATTTCAGCATCAGCAGAACATCACTGGCAGTTCGAAACCAGATGCTAGCAGTCTTGAAGGTTGCTCTAGGCTGTGTTAGTGTCGTGCCTGAAGCAAGGCCGAAGATGAAAAGCGTCCTTCGAATGCTTCTTAATGCCAGATAA 3510 43.45 MEKLSRSVSVWGNEKEPNPCAWKGVSCSSDNSSIANLSLSGLLVGSLPAFNGFVGLESLDFSSNMLNGTIVSQLGSLNDLKRLYLTSNNLSGNVPINLGNSKVLEHLILSKNSFTGSIPDGLLEYRKLVRIDLSENQLSGPLPGKIGDLSELEELTLSSNNLSGEIPMNLSNFQNLLRFAANQNKFTGNIPVGISRSLKNLDLMDLSYNLLEGSIPAKISPNMVRLRLGSNSLDGTIPSELGTLPKLTYLELENNSLSGSIPSKLGSCRSLALLNLGMNNLTGSLPVELASLSSLQVLKLQSNKLVGEIPYQMNQMQSLSTLDISGNLLSGSIPNSISRLRSLTKLNLQGNLFNGSIPATIDSLKNLLELQLGSNRLNGHIPGMPLSLQIALNLSHNLFEGTIPDTLSRLRGLEESSECQRKMRSHEQRVYFFFFFLSSVPFVLSLSSTQKEIMEKLSRSVLVWGNEKEPNPCAWKGIDGLKQLNFSKNRLVGSLPAFNGFVGLESLDFSKYRKLVRIDLSENQLSGPLPGKIGDLSKLEELILSSNNLSGEIPMNLSNFQNLLRFAANQNKFIGNIPVGISRSLKNLDLSYNKLGGQIPTDLLMQSNLQTVDLSYNLLEGSIPAKISPNMVSLALLNLGMNYLTGSLPVELASLSSLQVLKLQSNKLVGEIPYQISQMQSLSILNISGNLLSGSIPISISRLQNLTNLNLQGNRLSGSIPATIDSLKYLLELQLGNNQLNGHIPGMPLSLQIALNLSHNLFEGAIPETLSRLQGLEVLDLSNNKFSGAIPTSLTRIGSLTQLLLANNQLSGVIPEFGKYVTIIDTTGNPRLVNRTLQRNSPQSFPGKRKVKDEPLGATEDLPPPQVVQGNLLTANAIHRSNIDFTKAMEAVASTSNILLKTRFSTYYKAVMPSGRSYFIKKINWSDKIFQLGSHEKFGQELEILGKLSNSNVMMPLAYVLTVDSAYLFYEYAQKGTLFDILHGSFGSALDWASRYSIAVGIAQGLAFLHGYTSGPVLLLDLSSKSIMLKSVKEPQIGDIELYKVIDPSKSTGSVSTVAGSVGYVPPEYAYTMRVTMAGNVYSFGVILLELLTGKPPVSEGTELARWVLNNTAQRDKWDRILDFSISRTSLAVRNQMLAVLKVALGCVSVVPEARPKMKSVLRMLLNAR* 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20434240 20441673 + Vvi18g1402 Vvi18g1402 781105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1402 1169 Gene3D Ribonuclease Inhibitor 150 220 IPR032675 -
Vvi18g1402 1169 Gene3D Phosphorylase Kinase; domain 1 872 972 - -
Vvi18g1402 1169 ProSiteProfiles Protein kinase domain profile. 893 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1402 1169 SUPERFAMILY L domain-like 198 414 - -
Vvi18g1402 1169 SUPERFAMILY L domain-like 18 263 - -
Vvi18g1402 1169 PANTHER F12K21.25 43 414 - -
Vvi18g1402 1169 PANTHER F12K21.25 630 849 - -
Vvi18g1402 1169 PANTHER F12K21.25 511 634 - -
Vvi18g1402 1169 PANTHER F12K21.25 478 510 - -
Vvi18g1402 1169 PANTHER F12K21.25 6 42 - -
Vvi18g1402 1169 PANTHER F12K21.25 850 1166 - -
Vvi18g1402 1169 SMART LRR_typ_2 340 364 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 198 222 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 77 101 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 655 679 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 703 727 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 536 560 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 773 796 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 292 316 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 149 173 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 244 268 IPR003591 -
Vvi18g1402 1169 SMART LRR_typ_2 797 819 IPR003591 -
Vvi18g1402 1169 MobiDBLite consensus disorder prediction 837 863 - -
Vvi18g1402 1169 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 42 - -
Vvi18g1402 1169 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 511 634 - -
Vvi18g1402 1169 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 850 1166 - -
Vvi18g1402 1169 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 630 849 - -
Vvi18g1402 1169 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 478 510 - -
Vvi18g1402 1169 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 43 414 - -
Vvi18g1402 1169 SUPERFAMILY L domain-like 454 818 - -
Vvi18g1402 1169 Gene3D Ribonuclease Inhibitor 221 332 IPR032675 -
Vvi18g1402 1169 Gene3D Ribonuclease Inhibitor 333 429 IPR032675 -
Vvi18g1402 1169 Gene3D Ribonuclease Inhibitor 1 145 IPR032675 -
Vvi18g1402 1169 Gene3D Ribonuclease Inhibitor 437 844 IPR032675 -
Vvi18g1402 1169 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Vvi18g1402 1169 Pfam Leucine rich repeat 755 810 IPR001611 GO:0005515
Vvi18g1402 1169 Pfam Leucine rich repeat 294 352 IPR001611 GO:0005515
Vvi18g1402 1169 Pfam Protein kinase domain 904 1163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1402 1169 SUPERFAMILY Protein kinase-like (PK-like) 901 1165 IPR011009 -
Vvi18g1402 1169 Gene3D Transferase(Phosphotransferase) domain 1 974 1169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1402 - - - vvi:100264185 1048.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1402 . . . . . . . . . . Cma01g00920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011624 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76351 PF00069 Pkinase 9.40E-24 CL0016 Vvi PK