Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1404 ATGGCAGATGCTCATGAAACGGATAAAAACATTGAGATCTGGAAGATCAAGAAGTTGATCAAGGCATTGGAAGCTGCTAGAGGCAATGGCACTAGCATGATATCTCTTGTCATGCCTCCCCGTGATCAAATATCAAGAGTTACTAAGATGCTTGGGGATGAGTTTGGAACTGCTTCAAACATTAAAAGCAGGGTCAATCGTCAATCTGTTTTAGGTGCAATCACATCTGCACAGCAGAGACTGAAGCTGTACAACAAGGTTCCTCCTAATGGACTTGTGCTGTATACAGGTACCATTGTGACTGAAGATGGAAAGGATAAGAAGGTGACAATTGATTTTGAGCCTTTTAGGCCTATTAATGCATCTCTTTACCTATGTGACAACAAGTTCCATACAGAAGATATGAATGAACTCCCAATCCGGGATACTGGGAAGTATGTCTTTGGTGTTGATGACACACTGAAAGCCTTGGAGATGGGTGCTGTTGAGATTCTGATTATGTGGGAAAATCTTGATATTAATAGGTACGTTCAAGAAAAAATGTCACTGTTAGAGTGGTTTGCCAATGAGTACAAGCGCTTTGGTTGTGCACTTGAGTTCGTCACCAACAAATCACAAGAGGGATCCCAGTTCTGCAGAGGATTTGGTGGGATAGGTGGAATCCTTCGTTACCAGCTGGATATGAGATTATTTGATGAGGTTTCTGATGATGGAGAAAATTATGAGGATTCAGATTAG 738 41.46 MADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLVMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKDKKVTIDFEPFRPINASLYLCDNKFHTEDMNELPIRDTGKYVFGVDDTLKALEMGAVEILIMWENLDINRYVQEKMSLLEWFANEYKRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRLFDEVSDDGENYEDSD* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20461677 20465965 - Vvi18g1404 Vvi18g1404 781107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1404 245 Pfam eRF1 domain 3 140 226 IPR005142 -
Vvi18g1404 245 SUPERFAMILY L30e-like 140 228 IPR029064 -
Vvi18g1404 245 Pfam eRF1 domain 1 18 137 IPR005140 -
Vvi18g1404 245 SMART eRF1_1_2 4 140 IPR005140 -
Vvi18g1404 245 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 138 - -
Vvi18g1404 245 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 177 245 - -
Vvi18g1404 245 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 141 177 - -
Vvi18g1404 245 Gene3D eRF1 domain 1 1 138 IPR024049 -
Vvi18g1404 245 Gene3D - 179 245 IPR029064 -
Vvi18g1404 245 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 138 IPR004403 GO:0003747|GO:0006415
Vvi18g1404 245 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 141 177 IPR004403 GO:0003747|GO:0006415
Vvi18g1404 245 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 177 245 IPR004403 GO:0003747|GO:0006415
Vvi18g1404 245 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 138 IPR024049 -
Vvi18g1404 245 Gene3D - 144 178 IPR029064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1404 K03265 ETF1, ERF1; peptide chain release factor subunit 1 - cpap:110814703 358.221
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1404 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002781 3 2 2 2 3 1 2 1 1 2 1 1 2 2 2 2 1 2 1 1 2 1 1 1 1 2 2 5 3 2 54