Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1411 ATGGGCCGAAGCAGCAAAACCAGGAAGCACAGACACTCGTCGTCCGACGACGACGACGGTGATGACACGGCCAATTCTTCTTCCTCGTCACCATCCCCGTCAACCTCTCACAAGCGACGCCGCCGGAGAAAAGAGAGAAACGAACGTTCCAAGAGGAAGAGAGAGTCGAAGCATCGGAGATCGCGTAGAGACCGCAGAAAACGGGTTTCTGAGTCCGAAGATGGTTCCAGATCTTCCACCGACGAAGATTCGGAGCTCCGGAGGTCTAGGGTCGAGCCCAGGGCCGTTGTGAGGTATATTTTGAAGAAGTTCCCTGGCGTGGCCACTGATTTGGAGCAGCTTCTGCAAATGATTGATGATGGGCAAGCGGTCGACATCAAGGGATTATCGGAAAGATCTTTGATAAAGCATCTAAAGAAGTTATTCCTCTCATTAAACCTCAAGGAAAATGGTGATAGAGTTTTTCTACTGCCTTCAAAAGTTCGTCCTACTTTGGAGGTTGTTGGACCCATGCTTCAGTCTAACATAGAACCTAAAGAGGAGCAGCTTGGTCATGTGCCTAATGATAAACTTTCATTACCACCTGAGGTAGAAGGAGGACAAGTGCTGGATGAGAATGATATGGTAGTACAGTGTCCAAAGGTTGATGCTTCACCTCCAAAAAGAAGGGTGATTGGCCCTGAAATGCCATCTGCTGAATTACTTGCTGCTGCAGCCAAATTAACAGAAGCAGGGGCTGAGCTAAGGGAAGTGGAATTTGATGAAGATAGTGAAATATTTATAGGACCTCCTCCACCTGCTGTGGTTGCTGAAGCTGAATCAGCAAATGAAGCTGAGCGGTTTGAAGAGGTCACTAGGATTATGGGCGTTGAGACTGACAGCCCATATGATGTTCTAGGAGTGAACCTAAATATGTCTGTTGACAACGTAAAGAAAAGGTACTGGAAGCTGTCTCTCATGGTGCATCCCGACAAATGCCCTCATCCTCAAGCTCATCAAGCATTCATCATATTGAATAAAGCTTTTAAAGATTTACAGGACCCAGATAAGCGAAAAGCACTGGATGAGAAAATTAAACTGAAGGAGGAACAGGAGGCATTTAAGGCGGAGTTGAAAGCCATGCGCGAGGCTGCACATTGGAGAAGATTGCAAGGTATATCCATGGAGGGGGATGATGAGCTCCTGGCAGACATGGAGGTGAAAGTAGAACCAAAAAGAGATGAGTGGATGACAACTCTACCTCCAGAAAGAAAACCCGGTATGACCATGCAGTCCACAAAGTTTAGCAGAAGCTCTAAGGAAGGACGTGGTGATACTAGTGTTTGGACTGATACTCCTTCAGACAGAGCTCAGAAAGCAAAGATCAATTATTTAGAAGCGTATAATGAGGCTGCAGCACTTGCTTCAAATGAAATAGAAAAGAAAAGAACAAGTAGTGATGCAGATTTGGTGGACAAATACAATAAAGCCAAACGATCAAAGTCATTGGTGCAGAAGCACCACGAAGAGGCTGCTAGTAAAGGGTCAAAGCGGAAAGCAAAGCAGCAGCCACAGCTGGAGAAAGAAGAATGGGTGGGACAACACCCTTGGAAACCTTGGGATCGTGAGAAGGACTTGACGGCTGGGCGGCAAAGTGTGAAATTGGATGCAGATAACATGGCTGAGGGTTTGGCTTCAAGGTTTTCTTCAGGAAACTTTCAAAGGAACTTCCTATAG 1716 46.33 MGRSSKTRKHRHSSSDDDDGDDTANSSSSSPSPSTSHKRRRRRKERNERSKRKRESKHRRSRRDRRKRVSESEDGSRSSTDEDSELRRSRVEPRAVVRYILKKFPGVATDLEQLLQMIDDGQAVDIKGLSERSLIKHLKKLFLSLNLKENGDRVFLLPSKVRPTLEVVGPMLQSNIEPKEEQLGHVPNDKLSLPPEVEGGQVLDENDMVVQCPKVDASPPKRRVIGPEMPSAELLAAAAKLTEAGAELREVEFDEDSEIFIGPPPPAVVAEAESANEAERFEEVTRIMGVETDSPYDVLGVNLNMSVDNVKKRYWKLSLMVHPDKCPHPQAHQAFIILNKAFKDLQDPDKRKALDEKIKLKEEQEAFKAELKAMREAAHWRRLQGISMEGDDELLADMEVKVEPKRDEWMTTLPPERKPGMTMQSTKFSRSSKEGRGDTSVWTDTPSDRAQKAKINYLEAYNEAAALASNEIEKKRTSSDADLVDKYNKAKRSKSLVQKHHEEAASKGSKRKAKQQPQLEKEEWVGQHPWKPWDREKDLTAGRQSVKLDADNMAEGLASRFSSGNFQRNFL* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20619962 20633483 - Vvi18g1411 Vvi18g1411 781114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1411 571 Coils Coil 350 377 - -
Vvi18g1411 571 MobiDBLite consensus disorder prediction 35 65 - -
Vvi18g1411 571 Pfam Protein of unknown function (DUF3752) 414 562 IPR022226 -
Vvi18g1411 571 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 4 571 - -
Vvi18g1411 571 MobiDBLite consensus disorder prediction 418 447 - -
Vvi18g1411 571 Coils Coil 458 478 - -
Vvi18g1411 571 SUPERFAMILY Chaperone J-domain 267 352 IPR036869 -
Vvi18g1411 571 MobiDBLite consensus disorder prediction 490 544 - -
Vvi18g1411 571 MobiDBLite consensus disorder prediction 410 447 - -
Vvi18g1411 571 Gene3D DnaJ domain 280 378 IPR036869 -
Vvi18g1411 571 ProSiteProfiles dnaJ domain profile. 294 358 IPR001623 -
Vvi18g1411 571 PRINTS DnaJ domain signature 296 314 IPR001623 -
Vvi18g1411 571 PRINTS DnaJ domain signature 314 329 IPR001623 -
Vvi18g1411 571 PRINTS DnaJ domain signature 330 350 IPR001623 -
Vvi18g1411 571 MobiDBLite consensus disorder prediction 1 90 - -
Vvi18g1411 571 MobiDBLite consensus disorder prediction 66 90 - -
Vvi18g1411 571 CDD DnaJ 295 347 IPR001623 -
Vvi18g1411 571 Pfam DnaJ domain 295 355 IPR001623 -
Vvi18g1411 571 SMART dnaj_3 293 350 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1411 - - - vvi:100255442 957.592
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1411 . . . Bda03g00370 . Bpe04g00333 Bma04g00348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00995 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011130 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 2 2 1 31