Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1422 ATGGCAGGTCAGCTTGCAGCATTTGGTTATGTATTAAGTGACAATCCTGAGGAGGCAGACTTGTGGCTGATAAACACGTGCACAGTTAAGTCCCCAAGTCAGTCTGCTATGGACACCCTAATAACTAAAGGTAGAAGTTCAAAAAAGCCTCTGGTAGTGGCAGGGTGTGTTCCTCAAGGAAGTAGAGACTTGAAAGAGCTAGAAGGAGTCAGTATAGTTGGAGTCCAGCAAATTGACCGTGTGGTTGAGGTTGTAGAAGAGACTTTAAAAGGTCATGAGGTGCGACTTTTGAACCGCAAGACGCTGCCAGCACTCGACCTCCCAAAGGTGAGAAAGAACAAGTTTGTTGAGATTCTTCCAATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCTCGTGGTCATTTAGGAAGCTACACTGTTGACAGCCTTGTAGGGCGTGTAAGAACAGTTATAGCTGATGGAGTGAAGGAGATATGGTTGAGTAGTGAAGATACTGGAGCATATGGTCGTGACATTGGGGTTACTCTTCCAATTTTGTTGAATGCTATTGTTTCTGAACTTCCCCCTGATGGGGGCACAATGCTTCGCATTGGAATGACTAATCCTCCTTATATTCTGGAGCACTTGAAAGAGATGGCAGTTGTTTTGCGTCACCCGTGTGTATACTCCTTTCTTCATGTACCAGTCCAATCTGGGAGTGATGCCATCTTGAGTGCTATGAATCGAGAGTATACTGTAACTGAGTTCAGGACTGTGGTAGACACCTTGACTGAACTTGTTCCAGGAATGCAGATTGCAACTGATATAATATGCGGTTTTCCTGGTGAAACAGATGAAGAATTTGCTCAAACAGTCAGCCTCATACAGGAGTATAGGTTCCCCCAAGTTCATATTTCTCAATTCTATCCTCGGCCTGGGACACCTGCGGCCAGGATGAAAAAGGTCCCAAGTGCTGTAGTGAAGAAACGGAGTCGTGAATTGACTTCTATTTTTGAAGCTTTTACACCATATAATGGAATGGAAGGCAGAGTGGAAAGAATATGGATAAGTGAAATTGCAACTGATGGAATTCACCTGGTTGGCCATACGAAGGGATATATGCAGGTGCTTGTGGTTGCACCACGAAGCCTGATGGGAACGTCAGCTATTGTGAAAATAACATCTGTGGGAAGGTGGTCGGTTTTCGGAGAACTGATTGAGACTCTCAACCAAGTAAATGATAATATATCTTTGAATGAGGAAAAGTTCAGTCTGGGCAAATGTTCTCCCTGCTCTGTCCCAGGTGAAATTTGTGCGTGTTCAAGGGAGGCAGAACCTTGTGCTTGTGAACCACAAAGCTGTGAAGGAAAAATTAGTATGGAGGAAGGCTCTGTTTCAAGGAAGGACATGTTGCCAGAAAATCAAAACCTATTCAAATGGCTACTAAGGAGGCGGAAGAACCACGGACAGAAAAGGATAGAGAATGGAATTGCATGGGGATCCAAGGAAAAGGAAGAACGTGACCGAGGATGCATGAACCATTGGGGTCTAGTTGATAGGGTTCTTCTGGGTGGAATATTTGGAATCCTCCAGAGAGATTGCTCATATATGCTTTTCCATTATATACACCTTGAAGTAAGCTTTTCAATATAA 1650 43.82 MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKEIWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLRHPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPYNGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGELIETLNQVNDNISLNEEKFSLGKCSPCSVPGEICACSREAEPCACEPQSCEGKISMEEGSVSRKDMLPENQNLFKWLLRRRKNHGQKRIENGIAWGSKEKEERDRGCMNHWGLVDRVLLGGIFGILQRDCSYMLFHYIHLEVSFSI* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20839815 20855197 - Vvi18g1422 Vvi18g1422 781125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1422 549 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 1 408 IPR006466 GO:0035598|GO:0035600
Vvi18g1422 549 ProSiteProfiles TRAM domain profile. 344 406 IPR002792 -
Vvi18g1422 549 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 1 90 IPR013848 GO:0035596|GO:0051539
Vvi18g1422 549 SMART MiaB 115 336 IPR006638 GO:0003824|GO:0051536
Vvi18g1422 549 ProSiteProfiles Radical SAM core domain profile. 111 344 IPR007197 GO:0003824|GO:0051536
Vvi18g1422 549 SFLD Radical SAM 60 354 IPR007197 GO:0003824|GO:0051536
Vvi18g1422 549 Pfam Uncharacterized protein family UPF0004 1 62 IPR013848 GO:0035596|GO:0051539
Vvi18g1422 549 SFLD B12-binding domain containing 60 354 - -
Vvi18g1422 549 PANTHER RADICAL SAM PROTEINS 1 433 - -
Vvi18g1422 549 CDD Radical_SAM 119 324 - -
Vvi18g1422 549 Pfam Radical SAM superfamily 122 294 IPR007197 GO:0003824|GO:0051536
Vvi18g1422 549 SUPERFAMILY Radical SAM enzymes 105 339 - -
Vvi18g1422 549 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 1 400 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vvi18g1422 549 ProSitePatterns Methylthiotransferase radical SAM domain signature. 119 139 IPR020612 GO:0051539
Vvi18g1422 549 Gene3D - 1 102 IPR038135 -
Vvi18g1422 549 Gene3D tm_1862 like domain 113 344 IPR023404 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1422 K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] - vvi:100258899 1061.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1422 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010281 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31