Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1425 ATGATACAAAAATGGAGAAGCGCACTAAGAGAAGTAGCCAATCTGGCCGGATACGAGCTACAAACTGAGTACGAGTCTGAGATTGTTACAAGAATTGTTCAAGATATTTTGAGTAAATTGATGTACGAGCACTTACATGTTGATGAGAAGCTAGTCGGAATGGATTTTCGATTGAAGAGATTAAATTCATTGATAAGTGTGGATTCAAAAGATGTTCGCATGGTAGGAATTTATGGAATTGGTGGCATAGGGAAGACAACCATTACTAAAGTTTTTTATAATCAAAACTCTCATCAATTTCAAAGTAGCAGCTTTCTTGCAAATATTAGAGAGATTTTCAAAGAAAATCGTGGTCTACTTCGTTTACAAAAGAAACTTCTTCGTGATGCTCAAGTATTGGGAGTAAATGAAAAATTAACAACTTTTGATGAAGGAATCAATATGATCAAAAGTAGACTTTGCCATAAAAAGGTACTTGTTGTTCTTGATGATGCTGATCATTGGTCTCAATTAAAATCCTTAGTTGGAAAACGTGACTGGTTTGGTGAAGGAAGTAAAATCATCATAACCACTAGGAACAAACATCTATTAATTGAGCATGAAATGGATGAATTGTATGAACCGCCAATGTTAAATACAAATGAAGCTCTTGACCTCTTTTCTGAATACGCCTTCAGAAGAAATCATCGCCATGATGATTACCCATCTCTTTCTAATCGTATAATATATTATTGCCAAGGTCTGCCATTTGCTCTTAAAGTTTTAGGTTCTTCTCTATTTAGCAAGACACACGGTCAATGGAAAAGTGAATTAGATAAACTTGCTCTAGAACCTAACATGGACATTATAAATGTACTCAGAATAAGCTATGAGGGACTAAGTAACACACAGAAGAACATATTTCTCGATATTGCATGCTTCTTTAAAGGGGAGTACAAGGATTTTGTGATAAAAATATTGGATGGTTGTGGCTTCTTTGCAGAGAGTGGAATAGGAGTTCTTAATGATAGGTGTCTTGTCACTATTTTAGATAGAAAGTTATGGATGCATGATTTGATACAACAATTGGGTTGGGAAATTGTTCGAGAACAAGGTTATACCAACATTGGCAGACGTAGCCGGTTATGGAACTTTGTGGATGTTCAACACATGTTAATAAAGAAGACGGTACTATTCATGCATACTTACATATGTTACAACTTTAGTGTGTTCATGTTGGTTTATGTATACTATGCTTTTCTTATTCTCCATTCTTACTTTTTAGGGAACAAATGCAATTGA 1281 34.74 MIQKWRSALREVANLAGYELQTEYESEIVTRIVQDILSKLMYEHLHVDEKLVGMDFRLKRLNSLISVDSKDVRMVGIYGIGGIGKTTITKVFYNQNSHQFQSSSFLANIREIFKENRGLLRLQKKLLRDAQVLGVNEKLTTFDEGINMIKSRLCHKKVLVVLDDADHWSQLKSLVGKRDWFGEGSKIIITTRNKHLLIEHEMDELYEPPMLNTNEALDLFSEYAFRRNHRHDDYPSLSNRIIYYCQGLPFALKVLGSSLFSKTHGQWKSELDKLALEPNMDIINVLRISYEGLSNTQKNIFLDIACFFKGEYKDFVIKILDGCGFFAESGIGVLNDRCLVTILDRKLWMHDLIQQLGWEIVREQGYTNIGRRSRLWNFVDVQHMLIKKTVLFMHTYICYNFSVFMLVYVYYAFLILHSYFLGNKCN* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 20963969 20970885 - Vvi18g1425 Vvi18g1425 781128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1425 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 304 IPR027417 -
Vvi18g1425 426 Gene3D - 210 294 IPR042197 -
Vvi18g1425 426 Gene3D - 42 204 IPR027417 -
Vvi18g1425 426 SUPERFAMILY Winged helix DNA-binding domain 281 385 IPR036390 -
Vvi18g1425 426 Gene3D - 1 41 IPR035897 -
Vvi18g1425 426 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 47 400 - -
Vvi18g1425 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 400 IPR044974 GO:0006952
Vvi18g1425 426 Pfam NB-ARC domain 63 275 IPR002182 GO:0043531
Vvi18g1425 426 PRINTS Disease resistance protein signature 74 89 - -
Vvi18g1425 426 PRINTS Disease resistance protein signature 152 166 - -
Vvi18g1425 426 PRINTS Disease resistance protein signature 245 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1425 - - - vvi:100260625 754.977
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015144 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 10