Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g143 ATGACTCTACCTTCAAATCGCTCATTCTTTACAGCACTTCTGCAATACACCCACAACAGAAGTCTCCAAAAGGGCAAGGCCCTCCACGCCCAAATCATCAAATCCAGTTCTTCCTGCGTTTACATCGCTAACAGCCTTGTCAACTTGTACGCCAAGTGCCAACGCTTACGCGAAGCCAAGTTTGTTTTCGAGCGTATACAAAACAAGGACGTCGTCTCATGGAACTGCATCATCAATGGCTACTCTCAACATGGCCCCAGTGGCTCTTCCCATGTCATGGAACTCTTCCAGCGGATGAGGGCCGAGAACACTGCCCCGAATGCCCATACTTTTGCTGGCGTTTTCACCGCCGCCTCCACCTTGGTGGACGCAGCCGGTGGCAGACTAGCTCACGCGGTGGCAATAAAAATGGATAGTTGTCGTGACGTATTTGTGGGTAGTTCTTTGATGAATATGTATTGTAAGGCTGGTCTTACCCCGGAGGCTCGCAAGGTGTTTGATACAATGCCGGAGAGGAATTCGGTTTCTTGGGCGACGATGATTTCTGGGTATGCATCACAGAAGCTTGCTGCTGAAGCATTGGGGCTGTTTAGGTTGATGAGGAGGGAAGAGGAGGGCGAGAATGAGTTTGTGTTCACTAGCGTTCTTAGTGCATTGACGCTGCCTGAGTTGGTCAATAATGGTAAGCAAATTCATTGTATTGCGGTTAAAAATGGGCTGTTGTCGATTGTGTCCGTTGGGAATGCTCTCGTTACAATGTATGCAAAATGTGGGAGTTTGGATGATGCACTTCAAACGTTCGAGACGTCAAGTGATAAGAATTCTATTACATGGTCAGCGATGATCACTGGTTATGCACAATCTGGGGATTCTGACAAGGCCTTGAAGCTGTTTTCAAGTATGCATCTTTCGGGAATTAGGCCTAGTGAGTTCACATTCGTTGGGGTTATTAATGCTTGCAGTGATCTTGGTGCTGCTTGGGAAGGAAAGCAAGTGCATGATTATTTGCTGAAGCTTGGATTTGAATCCCAAATATATGTAATGACAGCTCTTGTTGATATGTACGCGAAATGCAGCAGCATAGTTGATGCTAGGAAGGGTTTTGATTATTTGCAAGAGCCTGATATTGTTTTGTGGACTTCCATGATTGGAGGGTATGTACAAAATGGTGAGAATGAAGACGCTCTGAGTTTATATGGTAGAATGGAGATGGAGGGTATTTTGCCCAATGAGCTAACTATGGCTAGTGTTCTAAAAGCCTGTTCAAGCCTTGCTGCCTTGGAACAAGGAAAGCAAATTCATGCCCGTACTGTTAAGTATGGATTTGGTCTAGAAGTTCCAATTGGAAGTGCTCTTTCGACCATGTATGCCAAGTGTGGGTGTCTCAAAGATGGCACGCTTGTCTTTAGGAGGATGCCTGCAAGGGATGTAATATCATGGAATGCAATGATATCTGGGCTCTCCCAAAATGGATGTGGTAAGGAAGCTCTAGAACTCTTCGAGGAGATGCAATTAGAGGGCACAAAGCCAGACTATGTTACCTTTGTTAACATTCTCTCTGCGTGTAGCCACATGGGATTGGTGGAAAGAGGATGGGGTTATTTCAGGATGATGTTTGATGAATTTGGTATGGACCCCAGAGTAGAGCACTATGCTTGCATGGTTGATATTCTGAGCCGTGCAGGAAAGCTCAAAGAAGCAATAGAGTTCACTGAATCGGCTACCATTGATCATGGAATGTGTTTGTGGCGTATTATATTAGGTGCTTGTCGGAACTACCGTAATTATGAGTTGGGAGCCTATGCAGGGGAGAAACTGATGGAGTTGGGCTCCCAAGAGTCATCTGCTTATGTGTTGCTGTCTAGTATCTATTCTGCCTTGGGCAGGTGGGAAGATGTGGAAAGGGTCAGGAGGATGATGAAACTCCGGGGAGTGAGTAAGGAGCCTGGTTGTAGCTGGATTGAGCTCAAGAGTGGGGTTCATGTTTTTGTTGTCAAAGACCAGATGCATCCACAGATTGGAGATATACATGTTGAGCTACGACAGTTAAGCAAACAAATGAAGGATGAAGGTTATGAACCTGCCACTGATTCATTTTCTGCTGCTTTATGA 2112 45.64 MTLPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEGYEPATDSFSAAL* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1431363 1433475 + Vvi18g143 Vvi18g143 779846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g143 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 92 402 - -
Vvi18g143 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 14 324 - -
Vvi18g143 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 225 693 - -
Vvi18g143 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Vvi18g143 703 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 225 693 - -
Vvi18g143 703 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 92 402 - -
Vvi18g143 703 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 14 324 - -
Vvi18g143 703 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Vvi18g143 703 TIGRFAM PPR: pentatricopeptide repeat domain 478 511 IPR002885 -
Vvi18g143 703 TIGRFAM PPR: pentatricopeptide repeat domain 148 173 IPR002885 -
Vvi18g143 703 TIGRFAM PPR: pentatricopeptide repeat domain 175 203 IPR002885 -
Vvi18g143 703 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Vvi18g143 703 Gene3D Tetratricopeptide repeat domain 327 441 IPR011990 GO:0005515
Vvi18g143 703 Gene3D Tetratricopeptide repeat domain 450 672 IPR011990 GO:0005515
Vvi18g143 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi18g143 703 Pfam E motif 593 655 IPR046848 -
Vvi18g143 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Vvi18g143 703 Pfam PPR repeat 248 268 IPR002885 -
Vvi18g143 703 Pfam PPR repeat 147 173 IPR002885 -
Vvi18g143 703 Pfam PPR repeat 175 203 IPR002885 -
Vvi18g143 703 Pfam PPR repeat family 273 320 IPR002885 -
Vvi18g143 703 Pfam PPR repeat family 69 117 IPR002885 -
Vvi18g143 703 Pfam PPR repeat family 374 422 IPR002885 -
Vvi18g143 703 Pfam PPR repeat family 475 523 IPR002885 -
Vvi18g143 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 106 IPR002885 -
Vvi18g143 703 Gene3D Tetratricopeptide repeat domain 3 120 IPR011990 GO:0005515
Vvi18g143 703 Gene3D Tetratricopeptide repeat domain 231 326 IPR011990 GO:0005515
Vvi18g143 703 Gene3D Tetratricopeptide repeat domain 121 230 IPR011990 GO:0005515
Vvi18g143 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g143 - - - vvi:100262605 1405.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g143 . . . . . . . . . . . . . . . . . Bhi04g00088 . . . . . . Cla08g01390 . . . . . . . . . . . . . Cme03g01545 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012001 0 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 2 1 1 0 0 1 25