Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1438 ATGGCTTCAACAACTCCTCACCTCATTACTGTCGACGATGACGACGAGTTCGATTGGGAAGCAGCTTTTAGAGAGATAGATGTGGCTTGCCAAACCACGAAACCCTCGATTTCATGCTCGGACAACAACAAACCCAGGCTCTCTAAGCAATCTACTCTCGATAATTTCATCAGCCCCGCCGGCGCTGTACCGCCATTGGAGAATTGGGATACACTAGATAGAGATAAAAGTAACTTGGTTGGTGATGAAGGGCTGTGCTGCATTGACGTTGATGCTGAGGCAGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTGCGTAAATATCAGTTATCTATAACCAAGACAGCTCTATTTTCAAATACATTGGTGGCATTGCCAACTGGTCTTGGCAAAACCCTTATTGCTGCTGTTGTTATGTACAACTATTTCAGATGGTTTCCTGAAGGTAATATAGTTTTTGCAGCTCCTTCTCGGCCGCTTGTCATGCAACAAATAGAAGCATGCCATAATATAGTAGGAATACCACAAGAGTGGACCATTGATATGACAGGTCAAACAAGTCCTACAAGGAGAGCTGGCCTCTGGAAAGCTAAACGAGTTTTCTTTGTTACACCTCAAGTGTTGGAGAAGGATATTCAATCTGTGGATACAGACCTCATAAAAAGGGGCTTGGTGCATATCAAGTGTGGCCCTTGTTGTATATGTCTGGTAAAATACTTGGTGTGTTTGGTGATTGATGAGGCTCATCGAGCTTTGGGAAATTATTCCTATTGCACAGCAGTTCGTGAGTTGATGGTGGCACCAGTGCAGCTGAGAATCTTAGCTTTGACAGCAACACCAGGATCAAAGCAGCAATCTATCCAGAATATAATTGATAATTTGCATATATCGACGCTTGAGTATCGTAATGAAAGTGATCATGATGTCAGCCCATATGTGCATAACAGGAATGTTGAATTAATAGAGGTTGCGATGGGCCAAGATGCTATTGAGATAAACAATGTGCTATTAGAAGTAATACGACCATTTGTGATTAGGCTTTGTGCAGTTGGAGTGCTTCAGAATAGAGACTTGCAAACTTTAGTACACCCCCTTGTATTATTTTTTATTCAAATACACTTGCAGATATACATGTATACATGGTTTCAAGTATTATTATATTTGCACATCCATTTGGTGCCATTTGATCTCTCTCTTTTAAATGCCAAATATAACCATCATATCTCTAAGGATAAATTTCGTCAAGCACCGCCACTAGCCCTTCCTCACATGAAGTATGGGGAAGTAGAAGGTTATTTTGGAGCTCTTATTACACTTTACCATATTCGTAAGTTACTTTCCAGTCATGGAATAAGGCCAGCCCACGAGATGCTCGAAGAAAAAATGCGACAAGGGCCTTTTGCAAGACTTATGAGTAAAAATGAAGTTCTTTGGAAAGCCAAGTGCTTAATGCAGCAAAGCTTGTCTAACGGCACCCCAAATCCAAAGTTGTCTAAAATGTTAGACATATTGATTGATCATTTCAGAGATGAACCACACAATACAGGAAGTGTGCACAAAGCAAACAATCCACAAAATTCAAGAGTAATCATTTTTTCAAATTTTAGGGGGAGTGTCAGGGACATAATGGATGCATTAGCAAAGATTGGGGAGTCAGTTAAAGCTACCCAGTTTATTGGCCAAAGCTCAGGAAAAGCATCAAAAGGTCAGTCACAAAAAGTTCAGCAGGCAGTTTTGGAGAAATTTCGCGCTGGTGGATTCAATGTCATTGTTGCCACGTCAATTGGTGAAGAAGGCCTGGATATCATGGAAGTTGATCTTGTAATATGTTTTGATGCTAATATCTCACCGTTGCGAATGATTCAACGCATGGGGAGGACTGGAAGGAAACATGATGGACGAGTTGATATCCTTTTATCATTTATGTTGTTACTAGTTTTAGCCTGTGAAGGGTCAGAAATGAAGGGTTACATGCGAAAGCAAGCAAACAGCAAGACTGTAAGGAAACACATGCGAAATGGGGGGATGAATAGTTTTAATTTCCATTCTAGTCCAAGAATGATTCCCCACATTTTCAAACCTGAAGTTCAGTTTGTTGAGCTATCAATTGAACAGTTTGTTCCTCGTGGAAGGAAAGGAAAAGATGATCATCCTATCCAGGCACCTATTTCCACAGACAAGCTAACTAATGTTGAGACTGAAGTTCTTGCAAAGTATTTCGGCACTACCGGAAAGATAACATGGCGACCATCTCTTATTGCTTTTCCACCCTTTCAGGCATTTCCCACTGGAGTGCATAAAATACCACATTCATTCAGAACAGAGATTCTGATTGACATGATGCAACATTTGCAAGGTCTATCATTTTCAGGAAACAGCAAAACATTCTTTGTTGAGGGTGAAGTCTCCACAAATGAGCATCTGGGAGTTGAAACTGTTGAACAGTATGACAAAATAGAAACTGTTGAACAGCATGAGGAAAGTAGAAAAGGTAACAGAAATTTCAACGACTCAAATGGCTTGTGCAATAGAACTTGTAGTCTCACCTATCAAAAAAAAAAAAAAAAACTTATTTTCAAATTTAATCATTTGTGTGATGTAAAATTTCAACATGCTGTTCCAGATTCAATTATTTTTGGTGATTCCCCAAAAGCGCAACCAATAAGAGAATTGTCTTATTCTGAAGAATCACCTATAAGGAACACAAAAACCAAGGAGAAGCATAGCATGTCTAGTTCCCAAGGCAACAATCCTCACGTGCATTCCTATCTATTTGGGTCCGATTTTGTATCTGTTGACACTCTTGGAAATGTCTTAATTTTATCTGTTCCCTTAATTCCTTCAAAGGAAGTTTCACATTCTAAGTGTGCAAGACAAAGTATGGAAGAAAAAGCCGTTGCAAACTTGAGGACTTCTGGCCAGGCAAGATGCACAATGGACGAGACTCTGCTAATATCCAAATTACACTACTCTCTCGGCCAGCAAGAGAAAAAACTGGATGGGGTTGAGGAGATTGTTCAGACTCCAATTTTGAAGGGAAGTCTGTCACATGAAGGAGATACTGCTGTTGAGACTCTTGTGGCAAACAAAACACCAATATTTCTAGCTGCTGAGTCCAGTGATGATATTGGAGACACTGACCTTAGTCCACGGTTAACTAATTTGATCAAAAGCGGCGTTGTTCCAGAGTCTCCTATAAATGAAAGTGGGCCATCAAATGGAAGACCAAGAAATGAGTTTCTTGTTCCAGATCTTGTTTCACCTGCCAAAGTACTTTCTGAAATGTTACTGACTGGAAAGAATGAAAAGGTCACTTTGGATGTTAGTACATCTGGACAAGATACCTTGAATTCTCCAATTAGTAATGGAATGCACTCTCCTATACTCAGGCCAGACATTAGTGCCAAAGCAAGAGGAAGCAATCCCTCTTCTCCAATTGTTGAGGAAGTCAAAACTCCCTTGGCAAATCTGACAAACAATAGTTGTAGCAAAGACTGGCATCTAAGCTCTGGAGACAAGTCAGCAAGTGTCAAGCAGGAAAGGAAGTTTAAAAGGTTGCGCAAATATGGAGACACTGGCCAAAGGAGGAATATGAAGAGCATGAAAGAAAATTCTATTGACCCTTCAGGAAACCTTGCCGAAACTTCTAGTATTATTCCTATCAGAAATAAGCATAACAGAGGTAAACAAAAGCCAGTTGACAATGTCAGAGCATTTATTGAAGAGGAAGCTGAGGTATCTTCAGAAGCTGAAGTATCTGATGATGAGGAAGATGACCAGAACAACAATTCATATGATGATAGTTTCATAGATGACAGAATAGATCCTACAGCAACAAGTACTCAAGCTGAAGATAGTAGAAGTGACATGATGGCAATTTACAGGCGTTCTTTACTCAGTCAATCACCAGTTGTGAGGCAGCCAAACTTTTCTGCTGATTTTAGTCCTTGCACTCTGGCTCCCATGACCAGGATAACTGAAACTGGAAGCTCTTTGAGCAAGACAACGTATTCTCTAAATCAGTCTTCTGAGAGGAATACATTGGAAAGTCGGAAAAGAAAATTGGGTATTTATCAAGGTGGATCTGTTCCTGCAATCAACTTAGAGAGACAATTTCAGTTGGAGGCTGCCAGCAAAGAATCATCCTTGCAACATCAAGCTGAGAAAATCGAAACAAATGGAGATGTGTTCTATGATGATCAATTTTATGAGGGGCTTGACCTTGATGCAGTGGAAGCTCAAGCTACCATGCTACTCAGACACAAATCAGAGTTGTTCACACAGAAGCAAGATCCACAAAGTCTGGATCTTTTTGGTTCTCCAACATTTGATCTTGGGATTTAA 4347 40.19 MASTTPHLITVDDDDEFDWEAAFREIDVACQTTKPSISCSDNNKPRLSKQSTLDNFISPAGAVPPLENWDTLDRDKSNLVGDEGLCCIDVDAEAAKTWIYPVNVPLRKYQLSITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGNIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQTSPTRRAGLWKAKRVFFVTPQVLEKDIQSVDTDLIKRGLVHIKCGPCCICLVKYLVCLVIDEAHRALGNYSYCTAVRELMVAPVQLRILALTATPGSKQQSIQNIIDNLHISTLEYRNESDHDVSPYVHNRNVELIEVAMGQDAIEINNVLLEVIRPFVIRLCAVGVLQNRDLQTLVHPLVLFFIQIHLQIYMYTWFQVLLYLHIHLVPFDLSLLNAKYNHHISKDKFRQAPPLALPHMKYGEVEGYFGALITLYHIRKLLSSHGIRPAHEMLEEKMRQGPFARLMSKNEVLWKAKCLMQQSLSNGTPNPKLSKMLDILIDHFRDEPHNTGSVHKANNPQNSRVIIFSNFRGSVRDIMDALAKIGESVKATQFIGQSSGKASKGQSQKVQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANISPLRMIQRMGRTGRKHDGRVDILLSFMLLLVLACEGSEMKGYMRKQANSKTVRKHMRNGGMNSFNFHSSPRMIPHIFKPEVQFVELSIEQFVPRGRKGKDDHPIQAPISTDKLTNVETEVLAKYFGTTGKITWRPSLIAFPPFQAFPTGVHKIPHSFRTEILIDMMQHLQGLSFSGNSKTFFVEGEVSTNEHLGVETVEQYDKIETVEQHEESRKGNRNFNDSNGLCNRTCSLTYQKKKKKLIFKFNHLCDVKFQHAVPDSIIFGDSPKAQPIRELSYSEESPIRNTKTKEKHSMSSSQGNNPHVHSYLFGSDFVSVDTLGNVLILSVPLIPSKEVSHSKCARQSMEEKAVANLRTSGQARCTMDETLLISKLHYSLGQQEKKLDGVEEIVQTPILKGSLSHEGDTAVETLVANKTPIFLAAESSDDIGDTDLSPRLTNLIKSGVVPESPINESGPSNGRPRNEFLVPDLVSPAKVLSEMLLTGKNEKVTLDVSTSGQDTLNSPISNGMHSPILRPDISAKARGSNPSSPIVEEVKTPLANLTNNSCSKDWHLSSGDKSASVKQERKFKRLRKYGDTGQRRNMKSMKENSIDPSGNLAETSSIIPIRNKHNRGKQKPVDNVRAFIEEEAEVSSEAEVSDDEEDDQNNNSYDDSFIDDRIDPTATSTQAEDSRSDMMAIYRRSLLSQSPVVRQPNFSADFSPCTLAPMTRITETGSSLSKTTYSLNQSSERNTLESRKRKLGIYQGGSVPAINLERQFQLEAASKESSLQHQAEKIETNGDVFYDDQFYEGLDLDAVEAQATMLLRHKSELFTQKQDPQSLDLFGSPTFDLGI* 1449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 21278126 21332628 - Vvi18g1438 Vvi18g1438 781141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1438 1448 MobiDBLite consensus disorder prediction 890 917 - -
Vvi18g1438 1448 SMART ultradead3 102 317 IPR014001 -
Vvi18g1438 1448 MobiDBLite consensus disorder prediction 1228 1245 - -
Vvi18g1438 1448 MobiDBLite consensus disorder prediction 1187 1287 - -
Vvi18g1438 1448 Pfam Type III restriction enzyme, res subunit 119 281 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vvi18g1438 1448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 299 IPR014001 -
Vvi18g1438 1448 MobiDBLite consensus disorder prediction 1204 1224 - -
Vvi18g1438 1448 Gene3D - 102 314 IPR027417 -
Vvi18g1438 1448 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 17 362 - -
Vvi18g1438 1448 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 404 1419 - -
Vvi18g1438 1448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 676 IPR001650 -
Vvi18g1438 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 639 IPR027417 -
Vvi18g1438 1448 MobiDBLite consensus disorder prediction 1187 1203 - -
Vvi18g1438 1448 Pfam Helicase conserved C-terminal domain 526 631 IPR001650 -
Vvi18g1438 1448 MobiDBLite consensus disorder prediction 1246 1266 - -
Vvi18g1438 1448 SMART helicmild6 541 632 IPR001650 -
Vvi18g1438 1448 CDD FANCM_ID 337 463 - -
Vvi18g1438 1448 CDD DEXDc_FANCM 104 303 IPR044749 GO:0005524
Vvi18g1438 1448 CDD SF2_C_FANCM_Hef 496 636 - -
Vvi18g1438 1448 PANTHER FANCONI ANEMIA GROUP M PROTEIN 404 1419 IPR039686 GO:0006281|GO:0043138
Vvi18g1438 1448 PANTHER FANCONI ANEMIA GROUP M PROTEIN 17 362 IPR039686 GO:0006281|GO:0043138
Vvi18g1438 1448 Gene3D - 485 674 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1438 K10896 FANCM; fanconi anemia group M protein - vvi:100254868 2467.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002752 1 9 2 2 1 2 1 2 2 1 2 2 1 1 3 1 2 1 2 2 1 1 1 3 1 3 2 1 2 2 57