Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1439 ATGCATTCGAGGCTAGCATTTCTCTTGCTTTCCTCCCCATTCAAACCAAGGCTTTCACGCCCGCCTACTTTTTCTTTCCTCTCTTCTCTCCCCACTCCTTCTTCCTTCATTCGCCGCCGGGGACTTTGCGGATACGCCGCCGAGCAGTTCTCCGATGATGAGTACGACTGCGATTTTGAGAGCCATAAGGCATCATCCTCAGTGGCGAACATTGATGAGTGGAAATGGAAACTCAGCCTGCTATCACGCAATGAACAAGATCAAGAGATTGTGTCCAGAGATAAAAAAGATAGGAGAGACTATGAGCAGATTTCTAATCTCGCCAACAGGATGGGTCTTTACAGTGAAATATATGGAAAAGTGATGGTTGTGAGCAAGGTTCCACTACCCAACTACAGACCAGATCTTGATGATAAACGGCCACAGAGGGAGGTAGTTATCCCACTAAGCTTGCAGAGGAGAGTAGAGGGTCTACTTCAGGAACATCTTGATAGAATGCTGTTGAGTTCTGGAAAGGTCAGCGACTGTTCTGATGATGCCAATGGCAATGGTGGGTTTGAAGATGTGAATCCTGAAGATAATCCAGACTCTCTCCTAGATGGGTCTGTTATGGAAAAGGTTCTTCAGAGGAGGAGTTTGCGAATGCGTAATATGCAGAGGGCTTGGCAGGAGTCACCTGAAGGTAAGAAGATGCTGGACTTTAGGAAATCTCTCCCTGCATTTAGAGAGAAGGAAAGGTTGCTCCAGGCAATTGCACGAAACCAGGTTGTTGTGGTTTCTGGGGAGACTGGATGTGGTAAGACGACTCAACTTCCTCAATACATATTGGAGTCGGAAATTGAATCTGGTCGTGGAGCATTCTGTAGCATAATTTGTACTCAGCCTCGAAGAATATCTGCTATGTCTGTTTCTGAAAGGGTGTCTACAGAGAGAGGAGAGCCTCTGGGTGAATCAGTTGGCTATAAAGTTCGATTGGAGGGAATGAAAGGAAAAAATACCCATCTACTTTTCTGTACCAGTGGTATTTTGCTTCGAAGGTTGTTGAGTGACCGCAACCTGAATGGTATAACCCATGTTTTTGTTGATGAAATTCATGAGCGAGGCATGAATGAAGATTTCCTATTGATTGTGTTGAAGGACCTTCTCCCACGTCGTCGGGATTTGAGATTGATTTTAATGAGTGCTACTCTTAATGCTGAGCTCTTTTCCAATTTTTTTGGTGGAGCACCAACAATTCACATTCCGGGCTTTACATATCCAGTGAGAGCCCACTTTCTGGAAGATGTGTTAGAAATGACAGGATATAAGTTGACTTCATTCAACCAAATTGATGATTATGGCCAAGAGAAAATGTGGAAGACTCAGAAGCAGCTAGTACCAAGGAAAAGGAAAAACAAGATCACTGCTCTTGTTGAGGATGCTCTTACTAAGTCAAGCTTTGAGAATTATAGCTCTGGAGTACGTGATTCGCTGTCATGTTGGACGCCTGATTGCATGGGATTTAATCTTATTGAGGCAGTTTTATGCCACATATGTCGGAAAGAACGGCCAGGTGCTGTGTTAGTATTCATGACAGGTTGGGAGGACATTAGTTGTTTGAGGGATCAAATTAGAGCTCATCCCCTCCTAGGGGATCCTAATAGAGTTCTGCTGCTTACGTGCCATGGTTCAATGGCAACTTCTGAACAGAAACTCATATTTGAGAAGCCGCCTCCTAATGTACGTAAGATAGTTCTTGCAACAAATATGGCAGAAGCAAGCATTACAATCAATGATGTAGTTTTTGTTGTTGACTGTGGGAAAGCAAAAGAAACCACCTATGATGCCTTGAATAATACCCCTTGTCTACTGCCATCTTGGATATCACAAGCTTCTGCCCGACAAAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGGGAATGTTACCACCTATACCCCTCATGTGTTTATGAAGCTTTTTCTGAATATCAACTTCCTGAACTGCTGAGAACTCCTTTGAATTCTCTATGCTTGCAAATAAAAAGTCTTCAGGTTGGGAGTATTGGAGAATTCTTATCAGCTGCACTGCAGCCACCAGAACCATTGGCTGTCCAAAATGCTGTTGATTTTCTGAAGATGATTGGAGCTTTGGATGAGAAGGAAAATCTTACAAATCTTGGTGAGTATTTATCAATGCTCCCAGTGGATCCCAAGCTTGGGAAAATGCTAATCATGGGCACTATCTTCCGTTGCTTTGATCCTATTCTAACAATTGTGGCTGGACTTAGTGTCAAGGATCCTTTCCTTTTGCCTCAAGACAAGAAGGATTTGGCAGGGACAGCAAAATCTAGATTCTCTGCAAAAGACTATAGTGACCACATGGCTCTTGTTCGTGCATATGAAGGATGGAAAGACGCAGAAAGAGAAGGATCAGCATATGAGTATTGCTGGAGGAATTTCCTCTCTGCCCAGACTCTTCAGGCTATCCATTCTCTTCGGAAACAGTTTAGCTTCATTCTAAAAGATGCTGGCTTACTAGATGCAGATGCAAACACCAATAATAGATTAAGTCATAACCAATCATTGGTTCGTGCAATCATATGCTCTGGTCTCTTCCCTGGCATAGCATCTGTTGTGCCAAGGGAAACGTCAATGTCTTTCAAAACAATGGATGACGGCCAAGTTTTACTATATGCAAATTCTGTGAATGCACGTTACCAGACAATTCCCTACCCTTGGCTTGTCTTTGGTGAAAAAGTGAAGGTCAATACAGTTTTTATACGGGATTCTACTGGGATATCTGATTCAATACTGATCCTTTTTGGTGGTACTCTGAGCCGTGGAGCAATGGCTGAGCATTTGAAAATGTTGGAGGGTTACATTGATTTCTTCATGGATCCTAGTTTGGCAGAGTGCTATTGGAAGCTTAAAGAGGAATTTGATAAGCTTTTACAAAAGAAACTTCAAAATCCTAGCTTGGACATCCACAAGGAAGGAAAGTACCTTATGCTTGGCATTCAGGAGCTGGTATCAGGAGATCAATGTGAAGGGAGATTTGTATTTGGGCGTGAAAGCAAGAAACCAAGGGAGCCTTGTGACAGCAACAGATTTACAAAAGATGGAACAAACCCAAAGAGCTTACTACAAACTCTTCTGATGCGAGCAGGGCATTCCCCTCCAAAATACAAAACAAAGCACCTCAAAACAAATGAATTCAGGGCACTGGTGGAGTTCAAGGGAATGCAGTTTGTGGGGAAGCCCAAGAAAAACAAGCAGCTCGCAGAGAGGGATGCAGCCATAGAGGCATTGGCCTGGTTGACTCACACATCTGACAACAGTCAGGGTGAATATGGCGAAGATGAGTCCCCTCCCGATGTCACTAACAACATGCTAAAAATTCTTGGAAAGCGCAGAAGATCAAAGCGTTCAACAAATAACTCAACTACCAACCAATTGTTTGCAACAAAGGGTATAGGCGATGAAGAACAAAGATTGGGAGATTTTTTTTAA 3489 43.31 MHSRLAFLLLSSPFKPRLSRPPTFSFLSSLPTPSSFIRRRGLCGYAAEQFSDDEYDCDFESHKASSSVANIDEWKWKLSLLSRNEQDQEIVSRDKKDRRDYEQISNLANRMGLYSEIYGKVMVVSKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRMLLSSGKVSDCSDDANGNGGFEDVNPEDNPDSLLDGSVMEKVLQRRSLRMRNMQRAWQESPEGKKMLDFRKSLPAFREKERLLQAIARNQVVVVSGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISAMSVSERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNFFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLVPRKRKNKITALVEDALTKSSFENYSSGVRDSLSCWTPDCMGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQIRAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPSCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKMIGALDEKENLTNLGEYLSMLPVDPKLGKMLIMGTIFRCFDPILTIVAGLSVKDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKDAGLLDADANTNNRLSHNQSLVRAIICSGLFPGIASVVPRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGISDSILILFGGTLSRGAMAEHLKMLEGYIDFFMDPSLAECYWKLKEEFDKLLQKKLQNPSLDIHKEGKYLMLGIQELVSGDQCEGRFVFGRESKKPREPCDSNRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNSQGEYGEDESPPDVTNNMLKILGKRRRSKRSTNNSTTNQLFATKGIGDEEQRLGDFF* 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 21347598 21439377 - Vvi18g1439 Vvi18g1439 781142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1439 1162 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 51 1033 - -
Vvi18g1439 1162 Pfam Helicase associated domain (HA2) 700 773 IPR007502 GO:0004386
Vvi18g1439 1162 Gene3D - 197 416 IPR027417 -
Vvi18g1439 1162 PANTHER ATP-DEPENDENT RNA HELICASE 51 1033 - -
Vvi18g1439 1162 SMART ultradead3 236 429 IPR014001 -
Vvi18g1439 1162 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 856 937 IPR011709 -
Vvi18g1439 1162 CDD DEXHc_RHA-like 254 414 - -
Vvi18g1439 1162 SUPERFAMILY dsRNA-binding domain-like 1030 1100 - -
Vvi18g1439 1162 Pfam DEAD/DEAH box helicase 247 399 IPR011545 GO:0003676|GO:0005524
Vvi18g1439 1162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 677 IPR001650 -
Vvi18g1439 1162 SMART helicmild6 531 637 IPR001650 -
Vvi18g1439 1162 MobiDBLite consensus disorder prediction 1128 1148 - -
Vvi18g1439 1162 Gene3D - 501 656 IPR027417 -
Vvi18g1439 1162 Pfam Helicase conserved C-terminal domain 506 636 IPR001650 -
Vvi18g1439 1162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 415 IPR014001 -
Vvi18g1439 1162 SMART DRBM_3 1037 1100 IPR014720 -
Vvi18g1439 1162 Gene3D - 1017 1104 - -
Vvi18g1439 1162 Pfam Double-stranded RNA binding motif 1037 1099 IPR014720 -
Vvi18g1439 1162 Gene3D - 679 780 - -
Vvi18g1439 1162 CDD SF2_C_RHA 501 645 - -
Vvi18g1439 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 805 IPR027417 -
Vvi18g1439 1162 SMART ha2_5 699 790 IPR007502 GO:0004386
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1439 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - vvi:100251493 2225.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010957 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 31