Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1440 ATGGAAGGAAGACTGAGCGTGATGGGCGTGGGGGTGGCGACCCTCTCGATCTTTGCCCTTCTATTTTCATCAGTCTCCTCCCACGATTTCCCCACCGACGGCACCGTTCTCGAACTCCATGATTCCAACTTCGATTCCGCCATTTCTGCCTTCGACTTTATCCTCGTCGACTTCTACGCCCCTTGGTGCGGTCACTGCAAGCGTCTCGCTCCCGAGTTAGATGCAGCTGCTCCCGTTCTTGCCAGTCTGAAGGAACCCATCGTGATTGCTAAAGTAAATGCTGACAAATTTACCCGCCTTGCTGTTAAATATGACATTGACGGGTTTCCTACCCTCAAGCTCTTTATACGTGGTGTTCCCATGGACTACTATGGACCAAGGAAAGCAGATTTACTTGTTCGCTTCCTGAAAAAGTTTGTTGCTCCTGATGTCTCTGTTCTTGTTTCAGATTCTGCTATAAGTAGCTTTGTTGAAGCAGCTGGCACTCATTTTCCTATATATATAGGATTTGGCTTGAATGAGTCCATGATATCAAACTTAGCCATCAAATACAAGAAAAAGGCATGGTTTTCAGTGGCAAAGGATTTTTCAGAGGATGTGATGGTGGCTTATGACTTTGATAAGGTTCCTGCTTTGGTATCTCTTCATCCTAGTTACAATGAGCACAGTGTCTTCTATGGCCCCTTTGATGGAGAATTCTTGGAGGATTTTATGAAACAAACCTTGTTCCCTCTGGTTTTGCCCATAAATTATGATACGCTGAAGTTGTTGAAAGATGATGATAGGAAAATTTTTCTGACATTTGTGGATGATGAGCTTGATGAGAAGTCAAAGAAATTGATTAACTTATTGAAGGCTGCTGCATCTGCAAATCGCGACTTAGTATTTGGTTTCGTTGGGATCAAGCAGTGGGGTGAATTTGCTGATTCTTTTGGGGCTAATAAGAAGACAAAACTGCCAAAAATGGTTGTTTGGGATGGAGATAATCAGTACTTTGAGGTTATTGGTTCGGAAAGCTTTGATGAGATAGATCAAGGTTCCCAAATCACTCGATTCATTGAAGGGTATAAAGAAGGAAGAACAGTAGAGAAGAAAATTGGTGGTCCATCGAATATCGGCCCAGAGACAAGGAAGATTAAGATGAGGCTATTGTCGATACGGATTTGGAGGAGGATGGTATGTAACCTTTGA 1191 43.16 MEGRLSVMGVGVATLSIFALLFSSVSSHDFPTDGTVLELHDSNFDSAISAFDFILVDFYAPWCGHCKRLAPELDAAAPVLASLKEPIVIAKVNADKFTRLAVKYDIDGFPTLKLFIRGVPMDYYGPRKADLLVRFLKKFVAPDVSVLVSDSAISSFVEAAGTHFPIYIGFGLNESMISNLAIKYKKKAWFSVAKDFSEDVMVAYDFDKVPALVSLHPSYNEHSVFYGPFDGEFLEDFMKQTLFPLVLPINYDTLKLLKDDDRKIFLTFVDDELDEKSKKLINLLKAAASANRDLVFGFVGIKQWGEFADSFGANKKTKLPKMVVWDGDNQYFEVIGSESFDEIDQGSQITRFIEGYKEGRTVEKKIGGPSNIGPETRKIKMRLLSIRIWRRMVCNL* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 21443286 21459454 + Vvi18g1440 Vvi18g1440 781143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1440 396 SUPERFAMILY Thioredoxin-like 243 360 IPR036249 -
Vvi18g1440 396 SUPERFAMILY Thioredoxin-like 30 139 IPR036249 -
Vvi18g1440 396 Pfam Thioredoxin 36 138 IPR013766 -
Vvi18g1440 396 CDD PDI_a_family 37 136 - -
Vvi18g1440 396 ProSiteProfiles Thioredoxin domain profile. 16 141 IPR013766 -
Vvi18g1440 396 PANTHER PROTEIN DISULFIDE ISOMERASE 8 390 - -
Vvi18g1440 396 PRINTS Thioredoxin family signature 54 62 - -
Vvi18g1440 396 PRINTS Thioredoxin family signature 62 71 - -
Vvi18g1440 396 PRINTS Thioredoxin family signature 105 116 - -
Vvi18g1440 396 ProSitePatterns Thioredoxin family active site. 55 73 IPR017937 -
Vvi18g1440 396 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 8 390 - -
Vvi18g1440 396 Gene3D Glutaredoxin 24 148 - -
Vvi18g1440 396 Pfam Thioredoxin-like domain 193 353 - -
Vvi18g1440 396 Gene3D Glutaredoxin 231 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1440 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - vvi:100251498 729.554
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1206 . . . . . . . Blo17g00155 Blo18g00166 . Bda13g01447 . Bpe14g00408 . Bma02g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006012 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38