Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1441 ATGGCTTCTGTGGCCTTCGCCAATGTGGTTCTCATTGGGAACAACGTAACTCTCTCTTTCGACGACATCCAAGCTAACTTCGCTAAACCAGTTAAAGGGTCGGGAGAATGCGGGATATTATATGTGGCAGAGCCTCTAGATGCATGTTCACCTTTGACTAATGCAGTGGAGAAGGTTGAGGGTGCTAGTTCACCATTTGTATTAATTGTTAGAGGAGGGTGTGGCTTTGAGGATAAAGTGAGAAACGCCCAAAAAGCAGGGTTCGCAGCTGCTATTGTATATGATAATGAAGATGGTGGTGTTTTGGTTGCAATGGCTGGAAATTCTGCTGGAATAAAAATACATGCTGTCTTTGTTTCCAAAGCTTCAGGCATGGTACTCCAAACGTATGCTGGTTCTCCTGACATGGAGCTGTGGATAATTCCAAGCTTTGAAAATTCAGCATGGTCAATCATGGCTATTTCTTTTATTTCCCTACTTGCCATGTCTGCAGTGCTGGCTACTTGTTTCTTCGTCCGCAGGCATCGCATAAGGCGACAACGACCTAGAGTTTCTCGTGTCCGGGAATTCCATGGGATGAGCAGTCGCTTAGTGAAGGCAATGCCGAGCCTTATTTTTACAACTGTTTTAGAGGATAATTGTACTTCAAGAACATGTGCCATATGCCTTGAAGACTATAATGTTGGAGAGAAGCTCAGAATTCTGCCTTGTCGTCACAAGTTTCATGCTTTTTGTGTGGACTCTTGGCTTACGTCATGGAGAACCTTTTGCCCTGTTTGCAAGCGCGATGCAAGAACAAGCACAGGTGATCCCCCATCAGAAAGCACACCTTTGCTTTCTTCCAGCCCAGGCTCTTTGGCTCCCTCTTCTCTGGTGTCATCTGTAAGATCATCTCTAGCCTCATCCTCAGCAATTCATATAGCTCCATCACCATCACCATCACATTCCCTCTCAGTTTCTCGGAACAACTCCCTGTCCGCCACTCCTTACATCCAGCAGAATGCGTCTTCCCAAAGATCTCATGCTTCCTATTTGGTTTCACCTCATTCTATGGGTTACCCATCATTATCACCTCTTAACTCAAGATACCTGTCCCCATACATTCCAAGCCCAAGCAACGCCTCACTGAGTTATGTTGGCTCATCTAGTCGACCGCCACACCCACTGCATTATAGCGAGTCAGCTACAAGTTTTTCTCCTTACACTTCTGCTCAATCTCTCCCGGAATTCATACTTGATTATGCAGACAAGACGGTTTCCTTGTTTCTATTTTGA 1275 45.41 MASVAFANVVLIGNNVTLSFDDIQANFAKPVKGSGECGILYVAEPLDACSPLTNAVEKVEGASSPFVLIVRGGCGFEDKVRNAQKAGFAAAIVYDNEDGGVLVAMAGNSAGIKIHAVFVSKASGMVLQTYAGSPDMELWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRQRPRVSRVREFHGMSSRLVKAMPSLIFTTVLEDNCTSRTCAICLEDYNVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGDPPSESTPLLSSSPGSLAPSSLVSSVRSSLASSSAIHIAPSPSPSHSLSVSRNNSLSATPYIQQNASSQRSHASYLVSPHSMGYPSLSPLNSRYLSPYIPSPSNASLSYVGSSSRPPHPLHYSESATSFSPYTSAQSLPEFILDYADKTVSLFLF* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 21471546 21496811 - Vvi18g1441 Vvi18g1441 781144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1441 424 Pfam PA domain 48 125 IPR003137 -
Vvi18g1441 424 MobiDBLite consensus disorder prediction 265 286 - -
Vvi18g1441 424 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 2 360 - -
Vvi18g1441 424 ProSiteProfiles Zinc finger RING-type profile. 219 261 IPR001841 -
Vvi18g1441 424 SMART ring_2 219 260 IPR001841 -
Vvi18g1441 424 SUPERFAMILY RING/U-box 208 275 - -
Vvi18g1441 424 Pfam Ring finger domain 218 261 IPR001841 -
Vvi18g1441 424 CDD PA_C_RZF_like 4 148 IPR044744 -
Vvi18g1441 424 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 360 - -
Vvi18g1441 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 266 IPR013083 -
Vvi18g1441 424 MobiDBLite consensus disorder prediction 269 286 - -
Vvi18g1441 424 SUPERFAMILY PA domain 66 146 IPR046450 -
Vvi18g1441 424 Gene3D - 4 136 - -
Vvi18g1441 424 CDD mRING-H2-C3H2C2D_ZSWM2 218 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1441 K15692 RNF13, RZF; E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27] - vvi:100246359 689.108
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1441 . . . . . . . . . . . . . . Sed11g2306 . . Bhi04g02514 Tan11g0071 Cmetu03g2001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00772 Cam11g0807 Cec11g0788 Cco11g0794 Clacu11g1051 Cmu11g0912 Cre11g1252 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005523 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 40