Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1444 ATGATGTCTAAACTCCTCCTTCTCTGTTTTCTTTTCTTCCTCTCATGTCCTCAACTTCTTTCTTCCTCTGTCTCTAATTACACTAAACCATTGTACCATCATCACCAAACCCTTGCTCTGCTCCACCTTAAGATATCCTTTTCTATTGACAATTCCAATTATGGGGAATACGATTTCAACGGCCTGGACCTCAATTGCAGTTGGCTCTTTGGCACTATCCATTCCAATACTACCCTCTTCCTTCTTCCCCATCTACAAAGGCTCAACCTGGCTTTTAACAACTTCTATGGGTCCTCTATTTCAGCTGGGTTTGGTCAATTCTCAAGCTTGACGCATCTTAATCTCTTTAACTCTGGATTTTCAGGCCTAATTTCACCAGAAATCTCTCACCTTTCCAACTTGGTTTCATTTGATCTATCTTGGAATTCTAACACAGAATTTGCCCCACATGGCTTCAATTCTCTGTCTTTACAGACTTTGGATCTCTCTAATTGTGGATTCTTAGGGTCCATCCCTACTTCACTAGAGAACCTTACACAAATCACTTCCTTGAACCTCGATGGGAATCATTTTAGTGGTAAAATTCCAAATGTTTTTAGTAACCTTCAAAATTTAATTTCATTAGTCCTTTCTAGAAACAATTTCAGTGGTCAACTTCCACCATCAATTGGAAATCTAACCAACCTTCATGAGTTAGACTTCTCCGATAATCATCTAGGAGTCATTCCTTCTCATGTAAATGAGTTTTCAAGTCTATCCATTGTCAACTTAGGGTATAACTTGTTCAACGGGACAATACCATCTTGGTTGTATACTCTACCATCATTGGTAACGTTAGATCTTAGTCATAACAAACTCACTGGTCATAGTGGTGAATTCCAATTTGATTCATTGGGGTATGTTGATTTGAGTATGAATGAGTTACATGGGTCAATTCCAAGCCCACTTCCAACTCCCCCAAATTTTGTGTATTTCTTTTCAGTCTCCAATAACAAATTGAGTGGAGAAATCTCACCATTGATTTGCAAAGTGGGCAACATCGGAGTTCTTGATTTGTCTTATAACAACTTAAGTGGTAGGCTTCCTCATTGTTTGGGGAATTTTAGCTATGATCTCTCTGTTTTGAATTTACGAAGGAATCGATTTTATGGCCCCATTCCTCCAACATTTTTAAAGGGCAATATTATCAAGAATCTTGATTTCAATAAAATTTTATTTCATTATGGCTTAAGCAACAATTTATGTGGGAAACTTCCACCATCAATTGGAAATCTAACAAACCTACGGGAATTAAATTTCTCTAATAACTTTAACTTATTCAATGGGACAATACCATCTTGGTTGTATACTCTACCATGGTTAATGCAATTAGATCTCAGTCATAACAAACTCACTGATCATATTGGTGAATTCCAATTTGATTCATTAGAGGTGATTGATTTGAGCATGAATGAGTTACATGGGTCAATTCCAAGTTCAATATTTAAGCTTGTAAACCTTAGATATCTTTATCTTTCTTCAAATAACTTAAGTGGCGTTTTGGAGAGAAGCAACTTTGGAAAACTTAGAAACCTCACTAGGGTTGATCTCTCAAACAACATGCTCTCATTGACAATGTCTGACAATTCCAATCTAAGAATCATTGATCTTGTTCACAATGATTTCAAGGGTGACTTGCCTAAAATGTATTTGAGAAGTTTGAAAGCAACAATGAATGTAGATGAAGGTAACATGACAAGAAAATATATGGGGAGAAGTTATTATCAAGATTTTATGATGGTGACAATAAAAGGATTGGAGATTGAATTTGTGAAAATATCAACTACTTTCACAACAATTGATTTTTCACGCAATAAATTCCAATGA 1866 35.96 MMSKLLLLCFLFFLSCPQLLSSSVSNYTKPLYHHHQTLALLHLKISFSIDNSNYGEYDFNGLDLNCSWLFGTIHSNTTLFLLPHLQRLNLAFNNFYGSSISAGFGQFSSLTHLNLFNSGFSGLISPEISHLSNLVSFDLSWNSNTEFAPHGFNSLSLQTLDLSNCGFLGSIPTSLENLTQITSLNLDGNHFSGKIPNVFSNLQNLISLVLSRNNFSGQLPPSIGNLTNLHELDFSDNHLGVIPSHVNEFSSLSIVNLGYNLFNGTIPSWLYTLPSLVTLDLSHNKLTGHSGEFQFDSLGYVDLSMNELHGSIPSPLPTPPNFVYFFSVSNNKLSGEISPLICKVGNIGVLDLSYNNLSGRLPHCLGNFSYDLSVLNLRRNRFYGPIPPTFLKGNIIKNLDFNKILFHYGLSNNLCGKLPPSIGNLTNLRELNFSNNFNLFNGTIPSWLYTLPWLMQLDLSHNKLTDHIGEFQFDSLEVIDLSMNELHGSIPSSIFKLVNLRYLYLSSNNLSGVLERSNFGKLRNLTRVDLSNNMLSLTMSDNSNLRIIDLVHNDFKGDLPKMYLRSLKATMNVDEGNMTRKYMGRSYYQDFMMVTIKGLEIEFVKISTTFTTIDFSRNKFQ* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 21653490 21670070 - Vvi18g1444 Vvi18g1444 781147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1444 621 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vvi18g1444 621 Gene3D Ribonuclease Inhibitor 244 291 IPR032675 -
Vvi18g1444 621 SUPERFAMILY L domain-like 30 290 - -
Vvi18g1444 621 SMART LRR_typ_2 202 225 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 131 154 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 273 295 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 522 546 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 178 201 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 344 368 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 82 107 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 451 475 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 497 520 IPR003591 -
Vvi18g1444 621 SMART LRR_typ_2 226 249 IPR003591 -
Vvi18g1444 621 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 411 576 - -
Vvi18g1444 621 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 240 536 - -
Vvi18g1444 621 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 62 220 - -
Vvi18g1444 621 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 154 270 - -
Vvi18g1444 621 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 62 142 - -
Vvi18g1444 621 Pfam Leucine rich repeat 180 239 IPR001611 GO:0005515
Vvi18g1444 621 SUPERFAMILY L domain-like 296 568 - -
Vvi18g1444 621 Pfam Leucine Rich Repeat 499 517 IPR001611 GO:0005515
Vvi18g1444 621 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515
Vvi18g1444 621 Gene3D Ribonuclease Inhibitor 33 154 IPR032675 -
Vvi18g1444 621 Gene3D Ribonuclease Inhibitor 155 243 IPR032675 -
Vvi18g1444 621 PRINTS Leucine-rich repeat signature 276 289 - -
Vvi18g1444 621 PRINTS Leucine-rich repeat signature 451 464 - -
Vvi18g1444 621 PANTHER RECEPTOR-LIKE PROTEIN EIX1 154 270 - -
Vvi18g1444 621 PANTHER RECEPTOR-LIKE PROTEIN EIX1 411 576 - -
Vvi18g1444 621 PANTHER RECEPTOR-LIKE PROTEIN EIX1 62 220 - -
Vvi18g1444 621 PANTHER RECEPTOR-LIKE PROTEIN EIX1 62 142 - -
Vvi18g1444 621 PANTHER RECEPTOR-LIKE PROTEIN EIX1 240 536 - -
Vvi18g1444 621 Gene3D Ribonuclease Inhibitor 292 621 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1444 - - - vvi:100255139 417.157
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1444 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000755 0 0 0 0 0 3 1 3 4 4 2 3 2 4 7 2 3 9 0 2 11 1 3 5 3 2 4 3 1 7 89