Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1452 ATGCAGACACTAGATTTACATGGTGCTTTTGTGCAGGATTTGAACCAGTGTAGTCAGAATTGCAATGATTCTGCCTACCATGGCAATGGAATTTGTATTGTTCTTCCTGGACATAGTGGAGTTCCAGAGTGGATGATGGAGAGAAGAACAATAGAGCTTCCGCAGAATTGGCACCAAGATAATGAGTTTTTGGGATTTGCTATATGCTGTGTTTATGTTCCACTTGATGATGAATCTGAGGACATATCCGAAAATGAATCAGACCATAAATCTCAGGATGAATCTGCAGCTGAATTATTTTCGGAGGATGTATATTTACCCTCTTGTTGTCTGAAATGTGCTTTGCGTTTCTATGGTGATAATGATCGATCGACGGATTTTCACAAATTTGAATCTCATTGTCTTTGCTATGGCCAAGGTAATGATAGTGTATCACGTCAAACGTGGGTGATTTTGTATTCCAAGGAAGCTCTTAAGGAGTGGTATCTCGCTGATGATGGGCACCACCTTTCACCTACATTTGGGGGCTCTTACAATACTTTTAAGAAAGCCTTTAAAGAGGGGAAGTGTGCAGTCCACCTTATATACTCCAAAGACCTTCCACTAAGGACACAGACACGGGATGCGGAGGTTAGAAGATGCAACCTATGCCAACAAAATGGGATATGTCGACAGCGTGGTTGTTTTGAGGACAGTGACATGAAGGAACTACCCATTATAGAGAATCCCTTGGAGCTTGATGGTTTATGTTTGCGGGGTTGCAAATACCTCAAGAGTCTGCCAAGTAGTATTTGCGAGTTCAAATCACTTACAACTCTCTGTTGCGAAGGCTGTTCACAATTGGAGAGCTTTCCAGAAATCCTGGAAGATATGGAAATCTTAAAAAAGCTTGATTTAGGTGGAAGTGCCATAAAAGAGATACCATCATCAATTCAACGTCTGAGAGGGCTTCAAGATCTGAATCTGGCATATTGCAAAAACCTTGTGAATCTTCCGGAAAGTATTTGTAATCTGACATCTCTTAAAACTCTCACTATCAAATCCTGTCCAGAACTCAAAAAATTGCCAGAGAACTTGGGGAGATTGCAATCTCTAGAAATTCTTTATGTTAAGGATTTTGATTCAATGAATTGTCAATTGCCATCTTTGTCGGGTTTGTGCTCCTTGAGAATATTACGACTAATCAACTGCGGTCTAAGGGAAATCCCTAGTGGTATTTGCCACCTAACGTCACTGCAATGTTTAGTTCTCATGGGGAACCAGTTCAGTAGCAAACCTGATGGGATCAGTCAACTTCACAAGCTAATCGTTCTTAACTTGAGTCACTGCAAGCTGCTTCAACATATTCCAGAGCCTCCATCGAATTTAATAACTCTAGTTGCCCATCAATGCACATCCCTGAAAATTTCATCGAGTCTACTCTGGTCTCCTTTTTTTAAATCCGGAATTCAGAAGTTTGTACCTGGAGTTAAATTACTCGATACTTTTATTCCTGAAAGTAATGGAATTCCAGAGTGGATAAGCCATCAGAAAAAGGGATCCAAAATAACTCTAACACTTCCTCAGAATTGGTACGAAAATGATGACTTCTTGGGCTTTGCTTTGTGCTCTCTTCATGTTCCACTTGATATTGAATGGAGGGATATCGATGAAAGCAGGAATTTCATATGTAAATTGAATTTCAACAACAATCCGTCTTTGGTGGTGCGTGATATCCAGTCTCGACGCCATTGTCAAATCTGCCGTGATGGAGATGAATCAAATCAATTGTGGTTGATAAAAATTGCCAAGTCAATGATTCCCAACATATATCACTCAAATAAATATAGGACCTTGAACGCTTCATTTAAAAATGACTTCGATACGAAATCAGTGAAAGTGGAGCGGTGTGGGTTCCAGCTTCTATATGCCCAAGATTGTGGACAGAATCATCTCACAATAGTACAAGGCAGCAGCTCTTCTCATGGGGATTTGGGTGGCCATAGATCAGCTGTACAAGATACCAATGATTGCGACAACCAAGAAGCCACTGAGCACAACCATCCGCCAAATGATACAACTGATCTCAGTCACACTTCTATCACTAATGCTCTCATCTTTTATTGTCTGAGGCTATCTAAGGGAAAAAGCTTAGCTGTTTGGTTAAAGATCCAACATTTCGTAAAGAGAATTCAAAGCAAGAATTAG 2187 40.33 MQTLDLHGAFVQDLNQCSQNCNDSAYHGNGICIVLPGHSGVPEWMMERRTIELPQNWHQDNEFLGFAICCVYVPLDDESEDISENESDHKSQDESAAELFSEDVYLPSCCLKCALRFYGDNDRSTDFHKFESHCLCYGQGNDSVSRQTWVILYSKEALKEWYLADDGHHLSPTFGGSYNTFKKAFKEGKCAVHLIYSKDLPLRTQTRDAEVRRCNLCQQNGICRQRGCFEDSDMKELPIIENPLELDGLCLRGCKYLKSLPSSICEFKSLTTLCCEGCSQLESFPEILEDMEILKKLDLGGSAIKEIPSSIQRLRGLQDLNLAYCKNLVNLPESICNLTSLKTLTIKSCPELKKLPENLGRLQSLEILYVKDFDSMNCQLPSLSGLCSLRILRLINCGLREIPSGICHLTSLQCLVLMGNQFSSKPDGISQLHKLIVLNLSHCKLLQHIPEPPSNLITLVAHQCTSLKISSSLLWSPFFKSGIQKFVPGVKLLDTFIPESNGIPEWISHQKKGSKITLTLPQNWYENDDFLGFALCSLHVPLDIEWRDIDESRNFICKLNFNNNPSLVVRDIQSRRHCQICRDGDESNQLWLIKIAKSMIPNIYHSNKYRTLNASFKNDFDTKSVKVERCGFQLLYAQDCGQNHLTIVQGSSSSHGDLGGHRSAVQDTNDCDNQEATEHNHPPNDTTDLSHTSITNALIFYCLRLSKGKSLAVWLKIQHFVKRIQSKN* 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 21853929 21856504 - Vvi18g1452 Vvi18g1452 781155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1452 728 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 229 614 - -
Vvi18g1452 728 Gene3D Ribonuclease Inhibitor 379 697 IPR032675 -
Vvi18g1452 728 MobiDBLite consensus disorder prediction 651 688 - -
Vvi18g1452 728 Gene3D Ribonuclease Inhibitor 292 378 IPR032675 -
Vvi18g1452 728 Gene3D Ribonuclease Inhibitor 214 291 IPR032675 -
Vvi18g1452 728 PANTHER LEUCINE-RICH REPEAT-CONTAINING 229 614 - -
Vvi18g1452 728 Coils Coil 721 728 - -
Vvi18g1452 728 Pfam C-JID domain 41 199 IPR045344 -
Vvi18g1452 728 Pfam C-JID domain 500 639 IPR045344 -
Vvi18g1452 728 SUPERFAMILY L domain-like 241 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1452 - - - vvi:100268040 1404.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .