Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1455 ATGATGAACACTGAATTGAATAAGGTGAACGTGATTGGGATATGTGGAACTGGTGGGATTGGTAAAACTACGATTGCCAAGGCTATTTATAATGAGATCTCATATCAGTATGATGGTAGTAGCTTTCTTAGAAATATGAGAGAAAGATCCAAAGGTGATATACTTCAATTACAAAAAGAACTTCTTCATGGAATCCTAAAAGGAAAAGGTTTTAGAATAAGCAATGTCGATGAAGGAGTTAATATGATAAAGAGGTGTCTCAATTCTAAAAGAGTTCTTGTTATTTTTTATGATGTAGATGATTTGACACAACTAGAATATTTGGCTGAAGAGAAGGATTGGTTTGATGTAAAAAGTACAATCATCATTACCTCTAGAGACAAACAAGTGCTTGCTCATTATGGAGTGCATATATCATATGAGGTTTCGAAATTTAATAATAAAGAAGCAATTGAACTCTTTAGTTTGTGGGCATTCAAACAAAATCTTCCCAAGGAAGCTTATAAAAACCTCTCATACAATATGATAGAGTATGCTGATGGCCTTCCATTAGCACTTAAACTTTTAGGTGCCTCTCTTTTTGGAAAGAAAATAAGCGAATGGGAAAGTGCATTATATAAGCTAAAAAGGATACCTCACATGGAAATTAACAAGGTACTTAGAATAAGTTTTGATGGACTTGATGATATGGATAAGAAGATTTTTTTGGATGTTGCATGTTTTTTCAAGGAGAAGGACAAATATTTTGTTTCAAGAATATTAGGCCCTCATGCCGAGTATGGAATAGCAACTCTAAATGACAAATGTCTCATAACTATTTCAAAAAACATGATAGATATGCATGATTTAATACAACAAATGGGCAGAGAAATTATTCGTCAAGAATGTCCTGAAGATCTTGGAAGAAGGAGTAGAGTATGGGATTCTGATGCATATCATGTGTTGACAAGAAATATGGGGACACGAGCAATCGAAGGACTATTCCTAGATATTTGTAAATTTGATCCAATACAGTTTGCTAAAGAATCTTTCAAACAGATGGATAGACTTAGATTGCTCAAAATCCATAAAGGTGATGAATATGATCTCATATCACTAAAGAGATTTCCGGAAATCAAGGGCAATATGAGAAAGCTAAGAGAGCTTGATTTAAGTGGAACAGCTATAAAAGTGCTACCATCATCATTGTTTGAACATCTAAAAGCTCTTGAAATTCTCAGTTTTAGAATGAGTTCAAAACTCAACAAAATCCCTATTGATATTTGTTGCCTATCATCATTGGAAGTATTGGATCTAAGTCACTGCAATATAATGGAAGGAGGAATTCCCAGTGATATTTGTCATTTATCATCACTGAAAGAACTAAATCTGAAATCGAATGATTTTAGAAGCATTCCTGCTACCATCAATCAACTTTCTAGGCTGCAAGTCCTTAACTTAAGTCACTGCCAGAATCTTCAACACATTCCAGAGCTTCCATCGAGTCTAAGGCTTTTAGATGCGCATGGTTCAAATCCTACTTCATCAAGAGCCTCATTTTTGCCAGTTCATTCTCTGGTCAATTGCTTCAATTCGGAAATTCAGGATTTGAATTGCAGTAGTCGGAATGAAGTATGGTCCGAGAATAGTGTTTCTACCTACGGCAGCAAGGGAATTTGTATTGTTCTTCCTGGAAGTAGTGGAGTTCCAGAGTGGATAATGGATGATCAGGGTATAGCGACAGAGCTTCCTCAGAATTGGAACCAAAATAATGAGTTTTTGGGATTTGCTTTGTGCTGTGTTTATGTTCCACTTGATGATGAATCTGAGGACGTATCCGAGAATGAATCAGACAATAGATCTGAGGATGAATCTGCTCACACCTCGGAGAATGAAATAGATGATAAATCTAAGAATGATTCTGTGGCTGAATTGTCGGAGTATGTATTTACGCCCTCTTGTCGTCTGAAATGTTCTTTGAAAATCTGTGGTGATAACATTACATTGGTGGATCTTCCCCTATATGAATCTAGTTGTTTTTGCTATGACCAAGATAATGACAGCGTATCACGTCAAACGTGGGTGATTTGGTATTCCAAGGCAGCCATTCAGGAGTGGTATCCCTCTGATCAATGGCCTTACATTGTACCTTTATTTGAGGGCTTTTACAATACTTTTAAGAAAGCCTTTAAAGTGGAGGAGTGTAAAGTCCGCCTTATATACTCCCAAGACCTTCCACCGACGACACAGACTCAGGATGCGCATGCAGATGTTAGAAGGTGCAGTGAATGCCAGCAAGAGGCGACATGCCGATGGCGTGGTTGTTTTAAGGACAGTGACATGAAGGAGCTACCCATTATAGAGAATCCCTCGGAGCTTGATGGTTTATGTTTGCGGGATTGTAAAACCCTCAAGAGTCTGCCAAGCAGTATTTGTGAGTTCAAATCCCTTACAACTCTCTCTTGCTCTGGCTGTTCACAACTAGAGAGCTTTCCTGAAATCCTGGAAGATATGGTAGTCTTTCAAAAGCTTGATTTAGATGGAACTGCCATAAAAGAGATACCCTCATCAATTCAGCGTCTAAGAGGGCTTCAATATTTGAATCTGGCATATTGCGAAAACCTTGTGAATCTTCCGGAAAGTATTTGTAATCTGACATCTTTAAGAACTCTCATTGTCGTTTCCTGTCCAAAACTCAACAAATTGCCAGAGAACTTGGGGAGATTGCAATCTCTAGAATACCTTTATGTTAAAGATTTGGATTCAATGAATTGTCAATTGCCGTCTTTGTCGGGTTTGTGCTCCTTGATAACATTACAACTGATCAACTGCGGTCTAAGGGAAATCCCCAGTGGTATTTGGCACCTATCGTCACTGCAACATTTAAGCCTCAGAGGGAACCGGTTCAGTAGCATACCAGACGGGATCAACCAACTTTATAACTTGATTGTTTTCGACTTGAGTCATTGCCAGATGCTTCAACATATTCCAGAGCTTCCATCAAGTTTAGAATATCTAGATGCCCATCAATGCTCATCACTGGAAATTTTATCAAGTCCCTCAACTCTACTCTGGTCTTCTTTATTCAAATGTTTTAAATCCAGGATTCAGGAGTTCGAAGTTAATTTTAAAGTCCAAATGTTTATTCCTGGAAGTAATGGAATTCCAGGGTGGATAAGCCACCAGAAAAACGGGTCCAAAATAACAATGAGACTTCCTCGGTATTGGTACGAAAACGATGACTTCTTGGGCTTTGCTTTGTGCTCTCTTCATGTTCCACTTGATATCGAAGAAGAAAACAGGAGTTTCAAATGTAAATTGAATTTCAACAACCGTGCATTTTTGTTGGTGGATGATTTCTGGTCTAAACGCAATTGTGAACGCTGCCTTCATGGAGATGAATCAAATCAAGTGTGGTTGATATATTATCCAAAGTCAAAAATTCCGAAAAAATACCACTCAAATGAGTATAGAACCTTGAACACTTCATTTAGTGAATACTTTGGTACTGAACCAGTGAAAGTGGAGCGGTGTGGATTCCACTTTATATATGCCCAGGAGGATTATGGATAG 3552 37.84 MMNTELNKVNVIGICGTGGIGKTTIAKAIYNEISYQYDGSSFLRNMRERSKGDILQLQKELLHGILKGKGFRISNVDEGVNMIKRCLNSKRVLVIFYDVDDLTQLEYLAEEKDWFDVKSTIIITSRDKQVLAHYGVHISYEVSKFNNKEAIELFSLWAFKQNLPKEAYKNLSYNMIEYADGLPLALKLLGASLFGKKISEWESALYKLKRIPHMEINKVLRISFDGLDDMDKKIFLDVACFFKEKDKYFVSRILGPHAEYGIATLNDKCLITISKNMIDMHDLIQQMGREIIRQECPEDLGRRSRVWDSDAYHVLTRNMGTRAIEGLFLDICKFDPIQFAKESFKQMDRLRLLKIHKGDEYDLISLKRFPEIKGNMRKLRELDLSGTAIKVLPSSLFEHLKALEILSFRMSSKLNKIPIDICCLSSLEVLDLSHCNIMEGGIPSDICHLSSLKELNLKSNDFRSIPATINQLSRLQVLNLSHCQNLQHIPELPSSLRLLDAHGSNPTSSRASFLPVHSLVNCFNSEIQDLNCSSRNEVWSENSVSTYGSKGICIVLPGSSGVPEWIMDDQGIATELPQNWNQNNEFLGFALCCVYVPLDDESEDVSENESDNRSEDESAHTSENEIDDKSKNDSVAELSEYVFTPSCRLKCSLKICGDNITLVDLPLYESSCFCYDQDNDSVSRQTWVIWYSKAAIQEWYPSDQWPYIVPLFEGFYNTFKKAFKVEECKVRLIYSQDLPPTTQTQDAHADVRRCSECQQEATCRWRGCFKDSDMKELPIIENPSELDGLCLRDCKTLKSLPSSICEFKSLTTLSCSGCSQLESFPEILEDMVVFQKLDLDGTAIKEIPSSIQRLRGLQYLNLAYCENLVNLPESICNLTSLRTLIVVSCPKLNKLPENLGRLQSLEYLYVKDLDSMNCQLPSLSGLCSLITLQLINCGLREIPSGIWHLSSLQHLSLRGNRFSSIPDGINQLYNLIVFDLSHCQMLQHIPELPSSLEYLDAHQCSSLEILSSPSTLLWSSLFKCFKSRIQEFEVNFKVQMFIPGSNGIPGWISHQKNGSKITMRLPRYWYENDDFLGFALCSLHVPLDIEEENRSFKCKLNFNNRAFLLVDDFWSKRNCERCLHGDESNQVWLIYYPKSKIPKKYHSNEYRTLNTSFSEYFGTEPVKVERCGFHFIYAQEDYG* 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 21957552 21963382 - Vvi18g1455 Vvi18g1455 781158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1455 1183 Pfam NB-ARC domain 9 213 IPR002182 GO:0043531
Vvi18g1455 1183 Pfam Leucine rich repeat 377 437 IPR001611 GO:0005515
Vvi18g1455 1183 SUPERFAMILY L domain-like 280 520 - -
Vvi18g1455 1183 Gene3D - 145 228 IPR042197 -
Vvi18g1455 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 237 IPR027417 -
Vvi18g1455 1183 Gene3D - 1 138 IPR027417 -
Vvi18g1455 1183 SUPERFAMILY L domain-like 756 1015 - -
Vvi18g1455 1183 Pfam C-JID domain 1046 1180 IPR045344 -
Vvi18g1455 1183 Pfam C-JID domain 560 738 IPR045344 -
Vvi18g1455 1183 ProSiteProfiles Leucine-rich repeat profile. 951 972 IPR001611 GO:0005515
Vvi18g1455 1183 PRINTS Disease resistance protein signature 11 26 - -
Vvi18g1455 1183 PRINTS Disease resistance protein signature 86 100 - -
Vvi18g1455 1183 PRINTS Disease resistance protein signature 179 193 - -
Vvi18g1455 1183 PRINTS Disease resistance protein signature 470 486 - -
Vvi18g1455 1183 MobiDBLite consensus disorder prediction 604 629 - -
Vvi18g1455 1183 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 791 847 - -
Vvi18g1455 1183 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 356 - -
Vvi18g1455 1183 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 373 593 - -
Vvi18g1455 1183 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 922 1145 - -
Vvi18g1455 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 791 847 IPR044974 GO:0006952
Vvi18g1455 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 356 IPR044974 GO:0006952
Vvi18g1455 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 373 593 IPR044974 GO:0006952
Vvi18g1455 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 922 1145 IPR044974 GO:0006952
Vvi18g1455 1183 Gene3D Ribonuclease Inhibitor 763 834 IPR032675 -
Vvi18g1455 1183 Gene3D Ribonuclease Inhibitor 322 532 IPR032675 -
Vvi18g1455 1183 Gene3D Ribonuclease Inhibitor 835 1035 IPR032675 -
Vvi18g1455 1183 SMART LRR_typ_2 949 972 IPR003591 -
Vvi18g1455 1183 SMART LRR_typ_2 424 448 IPR003591 -
Vvi18g1455 1183 SMART LRR_typ_2 376 399 IPR003591 -
Vvi18g1455 1183 SMART LRR_typ_2 878 902 IPR003591 -
Vvi18g1455 1183 SMART LRR_typ_2 449 472 IPR003591 -
Vvi18g1455 1183 SMART LRR_typ_2 926 948 IPR003591 -
Vvi18g1455 1183 MobiDBLite consensus disorder prediction 612 629 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1455 - - - vvi:100259499 1649.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24