Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1458 ATGAAGGTTTTCCTCTTACAAATTTTGGTGTTTCTACTTTTTGGTGGCGGCATCCATTGTCAAGCTTCAATCCGTCGGCTTACTTTTGTGGTGAAGGAAGCTTCATATACAAGGCTTTGTAGTACCAAGAACATGTTAACAGTAAATGGACAATTTCCAGGACCAACTATATATGCTAAGAAAGGAGAGACAATCATTGTTGATGTTTATAACAGGGGAAAAGAAAACTTATGGTTTCACAGGCATGGGGTGACCATGCCTAGATATCCATGGACAGATGGTCCCGAGTATATCACACAATGCCCAATTCAGCCAGGGTCAAAGTTTACGCAGAAGATCATCCTTTCCACTGAGGAAGGCACTCTATGGTGGCATGCCCACAGTGACTGGACCCGAGCCACTGTTCATGGAGCTATAATCATCTATCCCAAGAATGGAACCAAGTATCCTTTTCACAAACCTAATGCAGAAGTCCCCATCATATTAGGAGAATGGTGGAAAAGGGATGTGAATGAGGTTCGAGATGAAGGGCTTGCAACCGGAGCAGACCCCAACTCCTCTGATGCTTTATTGATAAATGGACAACCCGGTGATCTATATCCATGCTCAAAATCAGGCACGTTCAAGCTAACGGTGGATCATGGAAAGACCTATTTACTTCGCATAATCAATGCTGCCTTGCACGAGGCTCTCTTCTTCGCCATAGCTAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACGAGATTATATCACAATATTTCCTGGTCAAACCTTCGATGTCTTACTAGAAGCTAACCAACGCCCGGATCACTATTACATGGCGGCTATAACTTATTCTGTTGCCCCGAAATATCAAGACTTTTATGATAACACAACCACCACAGCTATTGTACAGTACAGGGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTGATCTTCCTGCATACAATGACACAGATGCATCGGTTCAAGTCATGGCCGGCCTCCGAAGCTTAGCAGATGCGGAACATCCTTGCGATGTCCCATTGAGCACGAACACTAACCTGTTTTACACTGTTTCTATGAACTCGTACCCATGCGTCAATAATTCATGTGGAGGGGCCAATGGGACGCGGTTCTCCTCAAGCATAAACAACATAAGCTTCGATTTCCCTACAATTGACATACTGGAAGCTTACTATTATAACATCAGTGGTGTATATGGAAATAACTTTCCTAGCTTTCCACCACTGGTGTTCGATTTTACATATGATTATCTTCCATTAGTCTATCAGTTGCCGAGCACCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGAGATTGTTCTTCAAGATACAGCCGTGCTTGCAGAGACACACCACCCCATGCATCTCCATGGATACAGTTTCTATGTTGTTGGATGGGGATTTGGGAATTTCGATGAAAATAGGGACCCTTTGCGCTATAATCTGGTGGATCCTCCCTTTCAGAATACCATCTCTGTTCCATCGAAAGGTTGGGTTGCAATCAGATTCGAGGCATCCAACCCTGGAGTGTGGTTCCTGCACTGCCATGTAGAACGTCATCTGACTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGTAAACACCCAGAAGCTCAAATGTTGCCTCCTCCATCCGACATGCCTCCATCTACACGGTTTCTACCTGCCCACAGGGTTTCCCGTTTCCGTGTCGGGCTTCAATTTACATTCACACCATTGCTTCTCAACCAAGAAATAATACAGATCATACACCTTCCCCTTTCCCCAAGACTGCCCGCGCAGCAAACAAAGAAGCTGATGGCCAAGAAAAGGGAGGAATTCTTCTTGAAGAATGGAAGCTTGTTATTAGAGAAGCTGGTTTCATCTTTGAATGGCAGGTCCAATCCCATCCGGAACTTCTCTATCAAAGAGCTGGAGCAAGCCACAAACAAATATAATAGCTCTCTAATTTTTGACCGGTGGACGTATTCTGAATGGTACAAGGGTTCTCTTGAAGGCAGATTCGTTTCCGTTAGGAAGTTTCATCCTGTGATTGACGATGCTTTTCTTGAGAGGGTCATCAAGGAAATTACCTTTGCAACACAACTGAGCGCTCACAAGAATGTTTTGAAGCTCTTCGGATGCTGCTTGGAGACCCAGACTCCCGTTCTGGTTTACGAATATCCGGTCAATGGAGTGGTGCCTCTCTATGATGTGATACATCCTTCTACAGATGGAAAAAGTAGGCAGCGTTTGCCATGGAAAAGTAGGTTAAGGATTTCAGGTGACATTGCTCATGTTATTGCATATCTCCACACTGCATTTCCGAGGGCTATCATTCATAGAGAGGTAACGCTTTCATTCTTCTTCTTGGATGAGGATTGTGTTCCCAAACTGTCCAATTTCTTCTTTGCTATAGCTCTTCCTGAGGGGAGAAAATATGTGGTGGATGGAGTGATGGGCATAGAGGGGTTCATAGCACCTGAGTATGAGATGACAGGAATGGTCACAGAGAAAGTAGATGTTTTTAGTTTTGGTAAACTTCTTCTGGAGCTTTTAACTGGCAGGAGGACCATTGATTTTGGGCCTTTGGGTAATGATGGGGAACTTCTTCTTCAGGATTGCATAAAAACATATGTAGAAGACCATGAACTTGATGGTTTTGTGGATGCTAGTATTCTGCCAAGAGGAGGAGAGATCCATGAGGAACTCCAACTCCTAGCAGTAACAAAACTTGCCCTGAGATGCATCATGACTGCTGCTGAGCAGAGGCCAACCATGGTGGAGATTGCAAAAGAACTCAGGCGAATTCAGAGAGGCATCTGCTCAAACGTGACTTTGACACCAACTTCATCAATCTCCCCTACTGCTTCCATGATTCAGATGGCAAACCCTCTAAATCAGTTGATTGATGTGAAATTGGACGTTACAAACTACCCCATATGGAAACGTCAAGTTCAGACTGCAATTAGGGGTTATGGCCTTGAAGGTTTCATCCTCGGGACTCGAGAAGTTCCTCCTGAGCTTATTCAAGTTGAAGACGGCACACAGATGGTGAATCCAGCCTATATTTCCTATCAACAACAAGATCACCTTCTTGCATCATGGATTCTCGCTTCAATGAGTCCAAGCTTCCTGCCACAACTAGTTGGCTGTGATACTGCCCTAGATATCTGGAATACTGTTGGGCACATCTTTACTTCTCAATCCACAGCAAAGATCATGCACTACAAGCATCAACTTCAAATTCTGAAGAAAGGTAGCCTCCCAATGGTCTACAGTACTAAGGAGGCTGAGATTCTACAAACTTAG 3336 44.42 MKVFLLQILVFLLFGGGIHCQASIRRLTFVVKEASYTRLCSTKNMLTVNGQFPGPTIYAKKGETIIVDVYNRGKENLWFHRHGVTMPRYPWTDGPEYITQCPIQPGSKFTQKIILSTEEGTLWWHAHSDWTRATVHGAIIIYPKNGTKYPFHKPNAEVPIILGEWWKRDVNEVRDEGLATGADPNSSDALLINGQPGDLYPCSKSGTFKLTVDHGKTYLLRIINAALHEALFFAIAKHKMTVVGTDGSYTKPLTRDYITIFPGQTFDVLLEANQRPDHYYMAAITYSVAPKYQDFYDNTTTTAIVQYRGYYTPSSPPSLPDLPAYNDTDASVQVMAGLRSLADAEHPCDVPLSTNTNLFYTVSMNSYPCVNNSCGGANGTRFSSSINNISFDFPTIDILEAYYYNISGVYGNNFPSFPPLVFDFTYDYLPLVYQLPSTGTEVRVLEYNSTVEIVLQDTAVLAETHHPMHLHGYSFYVVGWGFGNFDENRDPLRYNLVDPPFQNTISVPSKGWVAIRFEASNPGVWFLHCHVERHLTWGMETAFIVKNGKHPEAQMLPPPSDMPPSTRFLPAHRVSRFRVGLQFTFTPLLLNQEIIQIIHLPLSPRLPAQQTKKLMAKKREEFFLKNGSLLLEKLVSSLNGRSNPIRNFSIKELEQATNKYNSSLIFDRWTYSEWYKGSLEGRFVSVRKFHPVIDDAFLERVIKEITFATQLSAHKNVLKLFGCCLETQTPVLVYEYPVNGVVPLYDVIHPSTDGKSRQRLPWKSRLRISGDIAHVIAYLHTAFPRAIIHREVTLSFFFLDEDCVPKLSNFFFAIALPEGRKYVVDGVMGIEGFIAPEYEMTGMVTEKVDVFSFGKLLLELLTGRRTIDFGPLGNDGELLLQDCIKTYVEDHELDGFVDASILPRGGEIHEELQLLAVTKLALRCIMTAAEQRPTMVEIAKELRRIQRGICSNVTLTPTSSISPTASMIQMANPLNQLIDVKLDVTNYPIWKRQVQTAIRGYGLEGFILGTREVPPELIQVEDGTQMVNPAYISYQQQDHLLASWILASMSPSFLPQLVGCDTALDIWNTVGHIFTSQSTAKIMHYKHQLQILKKGSLPMVYSTKEAEILQT* 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22019850 22029457 - Vvi18g1458 Vvi18g1458 781161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1458 1111 Gene3D - 155 343 IPR008972 -
Vvi18g1458 1111 ProSitePatterns Multicopper oxidases signature 2. 528 539 IPR002355 GO:0005507
Vvi18g1458 1111 CDD CuRO_2_LCC_plant 158 307 IPR034285 -
Vvi18g1458 1111 Gene3D - 24 154 IPR008972 -
Vvi18g1458 1111 PANTHER LACCASE 7 563 - -
Vvi18g1458 1111 Gene3D Phosphorylase Kinase; domain 1 635 736 - -
Vvi18g1458 1111 Gene3D - 369 572 IPR008972 -
Vvi18g1458 1111 TIGRFAM laccase: laccase 22 564 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1458 1111 CDD CuRO_3_LCC_plant 409 548 IPR034289 GO:0005507
Vvi18g1458 1111 SUPERFAMILY Cupredoxins 22 167 IPR008972 -
Vvi18g1458 1111 SUPERFAMILY Cupredoxins 151 344 IPR008972 -
Vvi18g1458 1111 Pfam Protein tyrosine and serine/threonine kinase 684 942 IPR001245 GO:0004672|GO:0006468
Vvi18g1458 1111 ProSitePatterns Multicopper oxidases signature 1. 523 543 IPR033138 -
Vvi18g1458 1111 Pfam Multicopper oxidase 157 309 IPR001117 -
Vvi18g1458 1111 Pfam Multicopper oxidase 31 145 IPR011707 GO:0005507
Vvi18g1458 1111 PANTHER MULTI-COPPER OXIDASE 7 563 IPR045087 -
Vvi18g1458 1111 CDD CuRO_1_LCC_plant 28 143 IPR034288 GO:0005507
Vvi18g1458 1111 SUPERFAMILY Cupredoxins 376 563 IPR008972 -
Vvi18g1458 1111 SUPERFAMILY Protein kinase-like (PK-like) 650 960 IPR011009 -
Vvi18g1458 1111 Pfam Multicopper oxidase 438 548 IPR011706 GO:0005507|GO:0016491
Vvi18g1458 1111 Gene3D Transferase(Phosphotransferase) domain 1 743 951 - -
Vvi18g1458 1111 ProSiteProfiles Protein kinase domain profile. 660 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1458 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - vvi:100261103 1153.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76353 PF07714 PK_Tyr_Ser-Thr 1.10E-18 CL0016 Vvi PK