Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1460 ATGGCGGCTATAACTTATTCTGTTGCCCCGAAATATCAAGACTTTTATGATAACACAACCACCACAGCTATTGTACAATACAGCGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTTATCTTCCTGCTTACAATGACACAAATGCATCCGTTCAGGTCATGGCCGGCCTCCGAAGCTTAGCAAATGCGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAACCTGATTTACACTGTTTCTGTAAACTCGTACCCATGCGTCAATAATTCATGTGCAGGGGCCAATGGGACGCGATTCTCCTCAAGTATAAACAACATAAGCTTCCATACCCCTACAGTTGACATACTGCAAGCTTACTATTATAACATCAGTGGTGTATATGGAGATAAATTTCCTAGTGATCCACCACTGGTGTTCGATTTTACAGCTGATTATCTTCCATTAATCTATCAGTTGCCGAGCAGCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGAGATTGTTTTTCAAGGGACAAATGTGCTTGCAGCGACACACCACCCCATGCATCTCCATGGATACAGTTTCTATGTTGTTGGATGGGGATTTGGGAATTTCGATGGAAATAAGGACCCTTTGCGCTATAATCTGGTGGATCCTCCCTTTCAGAATACCATCTCTGTTCCTTCGAATGGTTGGGTTGCAATCAGATTCGAGGCATCCAACCCTGTATACAACTTTCCCTTTCTAATTGCAGACACATTCAAGCTAACGGTGGATCATGGAAAGACCTATCTACTTCGCATAATCAATGCTGCCTTGCAAGAGGCTCTCTTCTTCTCCATTGACAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACGAGATTTTATCACAATATTTCCTGGCCAAACCTATGATGTCTTACTAGAAGCTAACCAACGCCCGGATCACTATTACATGGCGGCTATAACTTATTCTGTTGCCCCGAAATATCAAGACTTTTATGATAACACAACCACCACAGCTATTGTACAATACAACGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTTATCTTCCTGCATACAATGACACAAATGCATCCGTTCAGGTCATGGCCGGCCTCCGAAGCTTAGCAAATGCGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAACCTGATTTACACTGTTTCTGTAAACTCGTACCCATGCGTCAATAATTCATGTGCAGGGGCCAATGGGACGCGATTCTCCTCAAGTATAAACAACATAAGCTTCCATACCCCTACAGTTGACATACTGCAAGCTTACTATTATAACATCAGTGGTATATATGGAGATAAATTTCCTAGTGATCCACCACTGGTGTTCGATTTTACAGCTGATTATCTTCCATTAATCTATCAGTTGCCGAGCAGCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGATATTGTTTTTCAAGGGACAAATGTGCTTGCAGCGACACACCACCCCATGCATCTCCATGGATACAGTTTCTATGTTGTTGGATGGGGATTTGGGAATTTCGATGGAAATAAGGACCCTTTGCGCTATAATATGGTGGATCCTCCCTTTCAGAATACCATCTCTGTTCCTTCGAATGGTTGGGTTGCAATCAGATTCGAGGCATCCAACCCTGGAGTGTGGTTCATGCACTGCCATGTAGAACGCCATCTGACTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGTAAACACCCGGAAGCTCAAATGTTGCCTCCTCCGTCGGACATGCCACCATGTTGA 1836 44.44 MAAITYSVAPKYQDFYDNTTTTAIVQYSGYYTPSSPPSLPYLPAYNDTNASVQVMAGLRSLANAEHPCNVPLSTSTNLIYTVSVNSYPCVNNSCAGANGTRFSSSINNISFHTPTVDILQAYYYNISGVYGDKFPSDPPLVFDFTADYLPLIYQLPSSGTEVRVLEYNSTVEIVFQGTNVLAATHHPMHLHGYSFYVVGWGFGNFDGNKDPLRYNLVDPPFQNTISVPSNGWVAIRFEASNPVYNFPFLIADTFKLTVDHGKTYLLRIINAALQEALFFSIDKHKMTVVGTDGSYTKPLTRDFITIFPGQTYDVLLEANQRPDHYYMAAITYSVAPKYQDFYDNTTTTAIVQYNGYYTPSSPPSLPYLPAYNDTNASVQVMAGLRSLANAEHPCNVPLSTSTNLIYTVSVNSYPCVNNSCAGANGTRFSSSINNISFHTPTVDILQAYYYNISGIYGDKFPSDPPLVFDFTADYLPLIYQLPSSGTEVRVLEYNSTVDIVFQGTNVLAATHHPMHLHGYSFYVVGWGFGNFDGNKDPLRYNMVDPPFQNTISVPSNGWVAIRFEASNPGVWFMHCHVERHLTWGMETAFIVKNGKHPEAQMLPPPSDMPPC* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22105716 22125120 - Vvi18g1460 Vvi18g1460 781163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1460 611 Pfam Multicopper oxidase 154 243 IPR011706 GO:0005507|GO:0016491
Vvi18g1460 611 Pfam Multicopper oxidase 480 594 IPR011706 GO:0005507|GO:0016491
Vvi18g1460 611 ProSitePatterns Multicopper oxidases signature 1. 569 589 IPR033138 -
Vvi18g1460 611 Pfam Multicopper oxidase 251 355 IPR001117 -
Vvi18g1460 611 SUPERFAMILY Cupredoxins 421 611 IPR008972 -
Vvi18g1460 611 Gene3D - 245 354 IPR008972 -
Vvi18g1460 611 PANTHER MULTI-COPPER OXIDASE 251 611 IPR045087 -
Vvi18g1460 611 PANTHER MULTI-COPPER OXIDASE 1 245 IPR045087 -
Vvi18g1460 611 SUPERFAMILY Cupredoxins 251 389 IPR008972 -
Vvi18g1460 611 SUPERFAMILY Cupredoxins 95 242 IPR008972 -
Vvi18g1460 611 Gene3D - 88 244 IPR008972 -
Vvi18g1460 611 Gene3D - 414 611 IPR008972 -
Vvi18g1460 611 CDD CuRO_3_LCC_plant 455 594 IPR034289 GO:0005507
Vvi18g1460 611 ProSitePatterns Multicopper oxidases signature 2. 574 585 IPR002355 GO:0005507
Vvi18g1460 611 PANTHER LACCASE 251 611 - -
Vvi18g1460 611 PANTHER LACCASE 1 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1460 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - vvi:100855245 751.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484