Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1462 ATGATTTTTTTTATTTTACTATTTACTTTCTATTTCACACGGGATGAGGAAATATTTTCTCCTAATGGCGTCATTGAAGGTATTTTCATCATTAGGGATGACATGAAACAGAGTCATGGTTGTGGATTTGTTAAGCTTCCTAATAGAGATATGGCTGGCAGTGGCAGCAATAAATGCACTAAGTGGAAATTACGTGATGAGGGGTTGTGA 210 36.19 MIFFILLFTFYFTRDEEIFSPNGVIEGIFIIRDDMKQSHGCGFVKLPNRDMAGSGSNKCTKWKLRDEGL* 70
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22217637 22217847 + Vvi18g1462 Vvi18g1462 781165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1462 69 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 53 IPR000504 GO:0003723
Vvi18g1462 69 SUPERFAMILY RNA-binding domain, RBD 17 52 IPR035979 GO:0003676
Vvi18g1462 69 Gene3D - 13 65 IPR012677 -
Vvi18g1462 69 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 16 58 - -
Vvi18g1462 69 PANTHER TRANSFORMER-2-RELATED 16 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1462 - - K13207 vvi:100262417 68.1662
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .