Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1465 ATGATCTTTAAATTGGAGGTCTCTGTGGATGAAAGGCTAGAGAGACAATCATTGTCGACGTTTATAACAGAGGAAAAGAAAACGTCACCATTCACTGGCACATTCAAGCTAACGGTGGATCATGGAAAGACATATCTACTTCGCATAATCAATGCTGCCTTGCACGAGGCTCTTTTCTTTGCCATTGACAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACGAGATTATATCACAATATTTCCTGGCCAAACCTACGATGTCTTACTAGAAGCTAACCAACGCCCAGATCAATATTACATGGCGGCTATAACTTATTCTGTTGCCCCTCAATATCAAAACTTTTATGATAACACAACCACCACAGCTATTGTACAGTACAGGGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTTATCTTCCTGCATACAATGACACAAATGCATCGGTTCAGGTCATGGCCGGCCTCCGAAGCTTAGCAGATGCGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAACCTGTTTTACATTCTTTCTATGAACTCGTACCCATGCGTCAATGATTCATGTGCAGGGCCCAATGGGACGCGGTTCTCCTCAAGTATAAACAACATAACCTTCGATTTGCCTACAATTGACATATTGGAAGCTTACTATTTTAACATCAGTGGTGTATATGGAAATAACTTTCCTAGCTTTCCATCATTTGTGTTCGATTTTACATATGATTATCTTCCATTAACCTATCAGTTGCCGAGTAGCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGAGATTATTTTTCAAGGGACAGCCGTGCTTGCAGAGACACATCACCCCATGCATCTCCATGGATACAGTTTCTATGTTGTTGGATGGGGATTTGGGAATTTCGATGGAAATAGGGACCCTTTGCGCTATAATCTGGTGGATCCTCCTCTTCAGAATACCATTTCTGTTCCTTCGAAAGGTTGGGTTGCAATCAGATTCGAGGCATCCAATCCTGGTATGTTACAAGAATTCATGTCCTCTATTAAAGAAAAAAACCCTTGA 1095 42.37 MIFKLEVSVDERLERQSLSTFITEEKKTSPFTGTFKLTVDHGKTYLLRIINAALHEALFFAIDKHKMTVVGTDGSYTKPLTRDYITIFPGQTYDVLLEANQRPDQYYMAAITYSVAPQYQNFYDNTTTTAIVQYRGYYTPSSPPSLPYLPAYNDTNASVQVMAGLRSLADAEHPCNVPLSTSTNLFYILSMNSYPCVNDSCAGPNGTRFSSSINNITFDLPTIDILEAYYFNISGVYGNNFPSFPSFVFDFTYDYLPLTYQLPSSGTEVRVLEYNSTVEIIFQGTAVLAETHHPMHLHGYSFYVVGWGFGNFDGNRDPLRYNLVDPPLQNTISVPSKGWVAIRFEASNPGMLQEFMSSIKEKNP* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22386903 22392771 - Vvi18g1465 Vvi18g1465 781168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1465 364 Gene3D - 10 171 IPR008972 -
Vvi18g1465 364 CDD CuRO_2_LCC_plant 32 134 IPR034285 -
Vvi18g1465 364 SUPERFAMILY Cupredoxins 28 171 IPR008972 -
Vvi18g1465 364 PANTHER LACCASE 33 352 - -
Vvi18g1465 364 Gene3D - 197 352 IPR008972 -
Vvi18g1465 364 SUPERFAMILY Cupredoxins 203 351 IPR008972 -
Vvi18g1465 364 PANTHER MULTI-COPPER OXIDASE 33 352 IPR045087 -
Vvi18g1465 364 Pfam Multicopper oxidase 31 136 IPR001117 -
Vvi18g1465 364 Pfam Multicopper oxidase 264 351 IPR011706 GO:0005507|GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1465 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - vvi:100266290 651.358
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484