Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g147 ATGATAGTGTCAGTTCCTTCTCGTTCATCACTTTCGTTACACTCTCTCTTCGTCCATTGTTTCATCAGTTTCAAAAAATTCGCGCACATACAGAAATACCCTTTTCTTCTGTGCAAATTCTTCATCAGCAAAAGAAGAATTTGCAATGCCAATCTCTTTCAACTCTCTCCCCCATTTCAGGTATATTCAATTGTTCAATCTCTCGTTTTCGCTATAAGCTCTTGCACGTCCGTATCCTATTGCTCCGCAATTCATGCTCGAGTGATCAAATCTTTGAATTACAGTGATGGTTTCATTGGTGACCGTTTGGTGTCAATGTATTTCAAATTGGGCTATGATGAGGATGCACAGAGGCTCTTTGATGAAATGCCTAACAAAGACTTGGTCTCCTGGAATTCGTTGATGTCGGGGCTTTCGGGAAGGGGGTATTTGGGTGCGTGCTTGAATGCGTTTTGTAGGATGAGAACAGAGAGTGGTAGGCAACCCAATGAGGTGACCCTTTTATCTGTAGTCTCAGCTTGTGCTGATATGGGAGCCCTAGATGAAGGGAAATCCCTTCATGGGGTTGTAGTCAAACTGGGGATGTCGGGGAAGGCTAAGGTAGTTAATTCTCTCATTAACATGTATGGGAAGTTAGGTTTTTTAGATGCGGCTAGTCAATTGTTTGAGGAAATGCCTGTGAGGAGTTTAGTGTCCTGGAATTCAATGGTTGTGATTCATAATCATAATGGGTATGCGGAGAAAGGGATGGATTTGTTTAATTTGATGAAAAGGGCTGGTATCAATCCCGATCAAGCCACTATGGTTGCCTTGCTTCGGGCTTGCACAGATACAGGTCTAGGAAGACAAGCAGAGTCCATTCATGCGTATATCCATAGATGTGGTTTTAATGCGGATATCATCATTGCAACTGCACTTCTAAATTTGTATGCAAAGTTGGGGAGGTTAAATGCTTCAGAGGACATTTTTGAAGAGATAAAAGATCGGGACAGAATAGCTTGGACTGCCATGCTTGCAGGCTATGCTGTGCATGCATGTGGCAGAGAAGCAATTAAGCTCTTTGATCTCATGGTCAAGGAAGGTGTGGAGGTTGATCATGTAACATTCACTCATTTGTTAAGTGCTTGCAGCCATTCAGGGCTTGTTGAGGAGGGGAAGAAATATTTTGAGATTATGTCTGAAGTTTACAGGGTTGAGCCTCGGTTAGATCACTATTCATGCATGGTTGACCTTCTAGGTCGCTCAGGACGTTTGGAAGATGCTTATGAGCTGATTAAGAGCATGCCAATGGAGCCTAGTTCTGGTGTATGGGGTGCTCTTCTTGGTGCTTGTAGGGTATATGGTAATGTTGAACTTGGTAAGGAAGTTGCGGAGCAATTGTTATCTCTAGACCCATCAGACCATAGAAACTATATTATGTTATCAAATATATACTCTGCGGCTGGTCTATGGAGAGATGCTTCTAAGGTGAGAGCTTTAATGAAGGAGAGGAGGCTTACAAGAAATCCTGGATGCAGTTTTATTGAGCATGGGAACAAGATCCATCGCTTTGTAGTTGGTGATCAATTACACCCCAGGTCAGACGAGATACATACCAAGCTGGAAGAACTTATCAGGAAAATTCGGGAGGCTGGATGTGCACCTAAAACAGAGTTCGTTCTACATGACATTGATGAGGAGGTCAAAGTGGATATGATCAATAAGCACAGTGAGAAATTGGCGATTGCATTTGGTCTTTTGGTGACTGGTTCTGGTGTGCCACTAATTATAACTAAGAATCTTAGAATCTGTGGTGACTGTCACAGCACTGCAAAGTTTGCATCATTGCTTGAGAAGCGTACCATCATTATTCGTGATTCAAAGCGGTTTCACCATTTTGCTGATGGATTATGTTCATGTAGGGATTATTGGTGA 1914 42.53 MIVSVPSRSSLSLHSLFVHCFISFKKFAHIQKYPFLLCKFFISKRRICNANLFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW* 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1449245 1451159 - Vvi18g147 Vvi18g147 779850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g147 637 Pfam PPR repeat 404 429 IPR002885 -
Vvi18g147 637 Pfam PPR repeat 203 227 IPR002885 -
Vvi18g147 637 Pfam PPR repeat 304 329 IPR002885 -
Vvi18g147 637 Pfam PPR repeat 103 126 IPR002885 -
Vvi18g147 637 Pfam PPR repeat 129 156 IPR002885 -
Vvi18g147 637 Pfam DYW family of nucleic acid deaminases 545 637 IPR032867 GO:0008270
Vvi18g147 637 Gene3D Tetratricopeptide repeat domain 55 192 IPR011990 GO:0005515
Vvi18g147 637 Gene3D Tetratricopeptide repeat domain 334 537 IPR011990 GO:0005515
Vvi18g147 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vvi18g147 637 Pfam E motif 447 509 IPR046848 -
Vvi18g147 637 Pfam PPR repeat family 330 377 IPR002885 -
Vvi18g147 637 Pfam PPR repeat family 230 275 IPR002885 -
Vvi18g147 637 Pfam E+ motif 514 541 IPR046849 -
Vvi18g147 637 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 44 623 - -
Vvi18g147 637 Gene3D Tetratricopeptide repeat domain 193 287 IPR011990 GO:0005515
Vvi18g147 637 SUPERFAMILY TPR-like 280 490 IPR011990 GO:0005515
Vvi18g147 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Vvi18g147 637 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 44 623 - -
Vvi18g147 637 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Vvi18g147 637 TIGRFAM PPR: pentatricopeptide repeat domain 405 428 IPR002885 -
Vvi18g147 637 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Vvi18g147 637 TIGRFAM PPR: pentatricopeptide repeat domain 202 229 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g147 - - - vvi:100260830 1266.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g147 . . . . . . . . Cmo05g00332 . . . . . . . . Bhi04g00085 . . . . . . Cla08g01392 . . . . . . . . . Cone20ag0051 . . . Cme03g01544 . . Bda08g01186 . Bpe02g01681 Bpe05g00164 . . . . . . Cma05g00329 Car05g00276 . . . . . . . . . . . . . . . . . Lsi08g01284 . Chy03g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012454 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 2 0 0 1 1 0 0 1 24