Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1470 ATGAAGGGTCCGTTGGATCGAACCAAGGTCATGGTCCGGCACTTGCCGCCGATGATTTTGGAGGCCGCGTTTTTGGAACAAATCAATACCGTCTTCAAGGGGCGCTACACCTTGGTCAAGTTTCGTCCCGGGAAAAACAGCCAGCAAAGACAGTCCTATTCTAGAGCCTACCTTGACTTCAAGAGGCCGGAGGACGTTATTGAGTTTGCTGAGTTCTTTGATGGGCATGTTTTTGTTAATGAGAAAGATCCTGAGTACCTGGAGTTCCTTGAACTTCTTGCGAAGCCTTTTGAGAATCTTCCCAAGCTTCCAAGGGTAGAAGACTCTCCACCACAATGTATGTTTTACGGGATGCTGCAAAGAACACAAGTGCAAAAGACAAGTGGAGCTGAAGCATTGAAAGAGGAAAGTGGAGTTTCTGGAGCTGTTGATGCTGGGAAGAAGAAAGTCCTCCTCCTGAAAGGAAAAGAGAGAGAAATTTCTCATCATTTACAGCAGCAGAATGTAACATCTCCAGTAAAGAATATACTTGGTGCAAATTCTCCCAAGCAGAATCAGAGACGTGAAGGTAGTGGAAGGATAATCAGAAGCATACTTTTAAACAAGGATGCACGTCAAAGTCAATCTTCTATGTTCCAGTCGGGGCAACAGTCCCAAGCCTCTAACTTAGAGAAGGAGAAACGACCTCCTCGCCCTCCACAGCTGTACACACAGCCTGCAATGCAAAGGAAGGTGAGGGACGCCGCTTTGCAAACCCCCAAAGCAAGGAATTTCTGCGGGCAACAACTGAAAAGAGATGAGTGA 804 46.64 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNSQQRQSYSRAYLDFKRPEDVIEFAEFFDGHVFVNEKDPEYLEFLELLAKPFENLPKLPRVEDSPPQCMFYGMLQRTQVQKTSGAEALKEESGVSGAVDAGKKKVLLLKGKEREISHHLQQQNVTSPVKNILGANSPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSGQQSQASNLEKEKRPPRPPQLYTQPAMQRKVRDAALQTPKARNFCGQQLKRDE* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22487870 22493242 + Vvi18g1470 Vvi18g1470 781173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1470 267 MobiDBLite consensus disorder prediction 164 192 - -
Vvi18g1470 267 CDD RRM_like_Smg4_UPF3 9 86 - -
Vvi18g1470 267 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 1 82 IPR039722 GO:0000184
Vvi18g1470 267 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 125 244 IPR039722 GO:0000184
Vvi18g1470 267 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 81 103 IPR039722 GO:0000184
Vvi18g1470 267 MobiDBLite consensus disorder prediction 205 223 - -
Vvi18g1470 267 MobiDBLite consensus disorder prediction 164 188 - -
Vvi18g1470 267 MobiDBLite consensus disorder prediction 205 267 - -
Vvi18g1470 267 Gene3D - 4 94 IPR012677 -
Vvi18g1470 267 SUPERFAMILY RNA-binding domain, RBD 8 91 IPR035979 GO:0003676
Vvi18g1470 267 Pfam Smg-4/UPF3 family 7 91 IPR005120 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1470 K14328 UPF3, RENT3; regulator of nonsense transcripts 3 - vvi:100852735 178.333
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1817 . . . . . . . . Bhi06g00237 Tan10g2036 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2