Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1471 ATGCGGCTGATCATCAAGGTTTTCCTCTTGCAAATTTTAGCGTTTCTAGTTTTTGGTGGTGACATTCATTGCCAAGCTTCAACCCGTGGGCTTACTTTTGTGGTGAGAGAAGCTTCATATACAAGGCTTTGTAGCACCAAAAACATCTTAACAGTAAATGGACAATTTCCAGGACCAACTATATATGCTATGAAAGAAGAGACGATCTTTGTTGATGTTTATAACAAGGGAAAAGAAAACATCACCATTCATTGGCATGGGGTGACCATGCCTAAATATCCATGGACAGATGGTCCTGAGTATATCACACAATGCCCAATTCAACCAGGGTCAAAGTTTAGACAGAAGATCATCCTTTCCTTTGAGGAAGGCACTCTATGGTGGCATGCTCATAGTGATTGGACTCGAGCCACCGTTCATGGAGCTATAATTGTCTATCCCAAGAATGGAACCAAGTATCCTTTTCACAAACCGAATGCAGAAGTTCTCATCATATTAGGACAATGGTGGAAGAAAGATGTGAATGAGGTTCGAGATGAAGCGCTTGCAACTGGAGCCGACGCCAATGCCTCTAATTCTTTATTGATAAATGGACAACCCGGTGATCTACTTCCATGCTCAAAATCAGGCACATTCAAGCTAACGGTGGATCATGGAAAAACTTATCTGCTTCGCATAATCAATGCTGCCTTGCAAGAGGCTCTCTTCTTCTCCATTGCCAAGCATAAAATAACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACGAGATTATATCACAATATTTCCTGGCCAAACCTATGATGTCTTACTAAAAGCTAACCGACGCCCAGATCACTATTACATGGCGGCTAAAACTTATGCCGAAGTCCCGATAGCTGGTAATAGATTTTATGATAACACAACCACCACAGCTATTGTACAATACAGGGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTCATTTTCCTGCATACAATGACACAAATGCATCGGTTCAGGTCATGGCCAGCCTCCGAAGCTTAGCAGATGTGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAAACTAATTTACACTGTTTCTGTAAACTCGTACCCATGCGTCAATAATTCATGTGAAGGGGCCAATGGGACGCGGTCTGCCGCAAGTATAAACAACATAAGCTTCCATACCCCTACAGTTGACATACTGGAAGCTTACTATTATAACATCAGTGGTGTATATGGAGATAAGTTTCCTAGTGTTCCACCACTGGTGTTCGATTTTACAGCTGATTATCTTCCATTACTCTATCAGTTACCGAGCACCGGAACAGAAGTAAGGGTGTTGGAGTATAACTCGACAGTGGAGATTGTTTTTCAAGGGACAAACTTGGTTGCTGGGACATTTCACCCCATACATCTCCATGGACACAGTTTCTATGTTGTTGGGTGGGGATTTGGGAATTTCGATGAAAATAGGGACCCTTTGCGCTATAACCTGGTGGATCCTCCCTTTCAGAATACCATCTCTGTTCCTGCGAATGGTTGGGCTGCAATCAGATTCGAGGCATCCAACCCTGGAGTGTGGTTCATGCACTGCCATGTAGAACGCCATCTGACTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGTAAACACCCGGAAGCTCAAATGCTGCCTCCTCCGTCAGACATGCCACCATGTTGA 1713 43.9 MRLIIKVFLLQILAFLVFGGDIHCQASTRGLTFVVREASYTRLCSTKNILTVNGQFPGPTIYAMKEETIFVDVYNKGKENITIHWHGVTMPKYPWTDGPEYITQCPIQPGSKFRQKIILSFEEGTLWWHAHSDWTRATVHGAIIVYPKNGTKYPFHKPNAEVLIILGQWWKKDVNEVRDEALATGADANASNSLLINGQPGDLLPCSKSGTFKLTVDHGKTYLLRIINAALQEALFFSIAKHKITVVGTDGSYTKPLTRDYITIFPGQTYDVLLKANRRPDHYYMAAKTYAEVPIAGNRFYDNTTTTAIVQYRGYYTPSSPPSLPHFPAYNDTNASVQVMASLRSLADVEHPCNVPLSTSTKLIYTVSVNSYPCVNNSCEGANGTRSAASINNISFHTPTVDILEAYYYNISGVYGDKFPSVPPLVFDFTADYLPLLYQLPSTGTEVRVLEYNSTVEIVFQGTNLVAGTFHPIHLHGHSFYVVGWGFGNFDENRDPLRYNLVDPPFQNTISVPANGWAAIRFEASNPGVWFMHCHVERHLTWGMETAFIVKNGKHPEAQMLPPPSDMPPC* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22524257 22527030 - Vvi18g1471 Vvi18g1471 781174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1471 570 PANTHER LACCASE 11 570 - -
Vvi18g1471 570 Gene3D - 158 349 IPR008972 -
Vvi18g1471 570 SUPERFAMILY Cupredoxins 155 349 IPR008972 -
Vvi18g1471 570 SUPERFAMILY Cupredoxins 26 172 IPR008972 -
Vvi18g1471 570 CDD CuRO_3_LCC_plant 414 553 IPR034289 GO:0005507
Vvi18g1471 570 ProSitePatterns Multicopper oxidases signature 2. 533 544 IPR002355 GO:0005507
Vvi18g1471 570 Gene3D - 20 147 IPR008972 -
Vvi18g1471 570 CDD CuRO_2_LCC_plant 162 312 IPR034285 -
Vvi18g1471 570 PANTHER MULTI-COPPER OXIDASE 11 570 IPR045087 -
Vvi18g1471 570 TIGRFAM laccase: laccase 27 570 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1471 570 SUPERFAMILY Cupredoxins 381 570 IPR008972 -
Vvi18g1471 570 ProSitePatterns Multicopper oxidases signature 1. 528 548 IPR033138 -
Vvi18g1471 570 Pfam Multicopper oxidase 161 314 IPR001117 -
Vvi18g1471 570 Pfam Multicopper oxidase 35 149 IPR011707 GO:0005507
Vvi18g1471 570 CDD CuRO_1_LCC_plant 32 147 IPR034288 GO:0005507
Vvi18g1471 570 Gene3D - 373 570 IPR008972 -
Vvi18g1471 570 Pfam Multicopper oxidase 442 553 IPR011706 GO:0005507|GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1471 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - vvi:100242375 1194.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1471 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484