Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1474 ATGGCTTCATCTCCACCTTCCGTCCAAGTAAGGGACAGCATTGATCTGACGCCCAAGGAGACCCAGATTTTCCAGAAACTTCTCCAAGTTGTTCGCCACTTTTCTCTCCGAACTCAGCTCCGCGTCGCCGGTGGCTGGGTCCGCGACAAGCTTCTAGGGAAGGAATGTTATGATATTGATATTGCTCTGGATGACATGCTGGGCAGAGAGTTTTGTGAGAAGATCAATGATTACTTGTCATGTACAGGGGAGGAAAAGCAAGGAATAGGTGTTATTCAATGTAACCCTGACCAGTCCAAACACTTGGAAACAGCAAGGATGCGCCTTTTTGATGAATGGATTGATTTTGTAAACTTAAGGTCTGAAGATTATAGCGAAAATAGCCGGATCCCGACAATGAGATTTGGCACTGCCAAAGAGGATGCATACCGAAGGGATTTAACCATTAATAGCTTGTTCTACAACATCAACACCAGTTCTGTTGAAGATTTTACTGGGAGAGGCATTGAGGATCTGAAGTCTGGAAAAATAGTTACACCATTACCTCCAAAGGATACATTTTTAGATGATCCCCTACGAGTTCTTCGGGCTATCCGTTTCGGCGCCAGGTTTGGGTTCATACTAGATGAAGAGTTAAAGTTGGCTGCTGGTTGTGATGATGTGAGAGCTGCCATTGCGGATAAAATTAGCAGAGAACGTATTGGTCATGAAATTGATCTTATGATCTCTGGCAATGAGCCGGTTAAAGCAATGACATACATCTGTGATTTGCTATTATTTTCGGTTGTCTTCAGTCTTCCTCCTATTGTTAAGCCTGCCATATCTGAAGAATGTGATAGGCTCTGCATTGGTTACATCGATGCTGGGTGGAACCTAATACAATTAATTGGATCCTCTACTTTCAATGATGAACAAAGAAGGCTCTATTTGTATGCGGCTTTGTTTCTTCCATTCAGAAAGACACTGTACGAGGGTGGCAAAGCTAGAAAGATTCCCGTTGTCAACCACATCATTCGGAACTCTCTTAAGCTAAGAGCTAGTGATGCTGACACGGTTGTAAGCATACACTGTGCAGTGGAGAAATTCATTTCCTTGATTCCCTTCATTGAATCCACTGAAAGCATTCAAATTTCTGAAGCTGAATGGGGAATTGAAATTCTTGATCTTCCTGTTACTTCAAAATTGCGAATATTGACAGGGTTGCTTCTGCGGGAAATCAAAGGTTTTTGGCGAGTTGCCTTGATGGTGTCCACATTATTATACCCAAATGATATTAATCATACTCGGGATATTTCGAAGAATAACTTTCAGTTGGATAAGAGAAGAAAGGTTTTTGAAATGGTTGAGAATGCCATTGTCGGACTAGGTCTAGAGGAAGTTTGGGAACTGAAACCCTTGGTTAACGGGAAGGATATCATGAATGTTTTGCAGCTTAAATCTGGAGGGCCACTCGTGAGGGATTGGCAACAAAAACTGATTCAGTGGCAGCTTGCACATCCCTCTGGGACTGCTGAGGAATGCCTTGATTGGATGAGGCAAAAGCGGCCAAAGCGCGAGTAA 1560 43.01 MASSPPSVQVRDSIDLTPKETQIFQKLLQVVRHFSLRTQLRVAGGWVRDKLLGKECYDIDIALDDMLGREFCEKINDYLSCTGEEKQGIGVIQCNPDQSKHLETARMRLFDEWIDFVNLRSEDYSENSRIPTMRFGTAKEDAYRRDLTINSLFYNINTSSVEDFTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRFGARFGFILDEELKLAAGCDDVRAAIADKISRERIGHEIDLMISGNEPVKAMTYICDLLLFSVVFSLPPIVKPAISEECDRLCIGYIDAGWNLIQLIGSSTFNDEQRRLYLYAALFLPFRKTLYEGGKARKIPVVNHIIRNSLKLRASDADTVVSIHCAVEKFISLIPFIESTESIQISEAEWGIEILDLPVTSKLRILTGLLLREIKGFWRVALMVSTLLYPNDINHTRDISKNNFQLDKRRKVFEMVENAIVGLGLEEVWELKPLVNGKDIMNVLQLKSGGPLVRDWQQKLIQWQLAHPSGTAEECLDWMRQKRPKRE* 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 22618199 22638670 + Vvi18g1474 Vvi18g1474 781177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1474 519 CDD NT_ClassII-CCAase 17 173 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vvi18g1474 519 Gene3D - 176 503 - -
Vvi18g1474 519 PANTHER TRNA-NUCLEOTIDYLTRANSFERASE 11 518 - -
Vvi18g1474 519 Gene3D Beta Polymerase, domain 2 7 173 IPR043519 -
Vvi18g1474 519 Pfam Poly A polymerase head domain 40 177 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vvi18g1474 519 SUPERFAMILY Nucleotidyltransferase 16 174 IPR043519 -
Vvi18g1474 519 SUPERFAMILY Poly A polymerase C-terminal region-like 177 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1474 - - - vvi:100257606 1040.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00156 . . Bda13g01449 . Bpe14g00407 . Bma02g00192 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010577 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 30