Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1482 ATGGGTCAAGGAGTTGTTCATCAAGCATGTCCTCAAGAGCCAGGAAAACAGAGCAGATTGTGGAGATCAGAGGATGTCCATCGCATATTGCTCAAAAATGAAGGGACTGATGCGATTGAAGGGATATTTCTAGATACATCTCCAGCAGAACCAATAGAGTTTACCATTCTAGATACATCTCCAGCAGTACCAATAGAGTTTACCACTGAAGCTTTTAAAATGATGAACAAACTTAGATTACTCAAAGTTTGTCGAGGTCATAAATGTGGTTCCATGGTAAAAAATTATGAAGTGCGTGTTTCTACCAACTTTGAATTTCCATCTTATGAGTTAAGATATCTTCATTGGGATGGATATCCTTTGGAATATTTGCCATCAAATTTTCATGGAGAGAACCTTGTTGAATTGAATCTGCGGTATAGTAAACTAAGAGTGCTTTGGCAAGGGCTTAAGCCTCCTGAGAAGTTAAAGCCTCTTGAGAAGTTAAAGGTTATCAATCTCAGTCACTCTCAGCAGCTCATTCAAATCCCAGACTTCTCCGATACACCAAATCTGGAGAGTCTAATTCTTAAAGGGTGCACAAACCTTGAGAACATTCCAAGCAGCATTTGGCACTTGGATTCTCTTGTAAATCTTGATCTCTCTCACTGTTCAAAACTCCAGGAACTTGCAGAGATCCCGTGGAATCTATACTCATTGGAATATTTGAACTTGGCATCCTGCAAAAATCTTAAGAGCCTTCCAGAGAGCCTTTGTAACTTGAAATGTCTTAAGACTCTCAATGTAATCGGGTGTTCAAAACTGCCCGACAACCTGGGAAGCCTGGAATGTCTAGAGAAGCTTTATGCATCAAGTTCAGAATTGATTAGCCCTCAATCGGATTCCTCTTTGGCTGGTTTGTGCTCCTTAAAAGTATTGGATATGCATGACACCAACCTAATGCAACGTGCAATCAGTGGTGACATTGGCAGCTTATACTCATTGGAAGAATTAAACCTAAGTTACTGTAATTTAACAGAAAAAGAAATTCCCGATGATATTTGCTGCCTATACTCATTGAGAGTATTAGATCTAAGTGGAAACCTTTTTCTTGGAGTAACTGATGCCATAAGTCAACTTTCTGAGCTAAGAGAGCTTGGGTTGAGGCACTGCAAGAGTCTTCTAGAAATTCCAAAGCTTCCATCAAGTCTCAGAGTCCTAGATGCCCATGATTGCACAGGCATCAAAACGTTATCAAGTACATCAGTGTTGCAATGGCAGTGGCAGTTAAATTGCTTCAAATCTGCTTTTTTACAAGAAATTCAGGAGATGAAATACAGAAGGCTTTTGTCTCTTCCAGCAAATGGTGTCAGCCAGGGATTTAGTACTGTTATCCCTGGAAGTGGAGAACTTCCAGAGGTGAACCAGAGAAGTAGTACATCTGAGAATGCCACGGTGAATATCACGCAACCTTATCATTTAGGATGTGAATTGACTTTCCTTGATGATGAAATTGGGTTTTTGGATTATCTCTCCTGTGGATCATCCTGCCAATGCGACCATAATGATGGTGTATCAGAGTCAGTGTGGGTAACGTATTATTCTAATGTTGCTATTAAGCACAGATATCGCTCCGATAAACCAAGGTTTTTAAAGGCTTCATTTCGTGGCCATGTTAATGGTAAACCAGTGAAGGTGGAACAGTGTGGGATTGGTCTTGTACACGTTGATCTTGAGAACAGCAGTGGAGTTGGAAGTGGTAAGCTCTAG 1749 40.48 MGQGVVHQACPQEPGKQSRLWRSEDVHRILLKNEGTDAIEGIFLDTSPAEPIEFTILDTSPAVPIEFTTEAFKMMNKLRLLKVCRGHKCGSMVKNYEVRVSTNFEFPSYELRYLHWDGYPLEYLPSNFHGENLVELNLRYSKLRVLWQGLKPPEKLKPLEKLKVINLSHSQQLIQIPDFSDTPNLESLILKGCTNLENIPSSIWHLDSLVNLDLSHCSKLQELAEIPWNLYSLEYLNLASCKNLKSLPESLCNLKCLKTLNVIGCSKLPDNLGSLECLEKLYASSSELISPQSDSSLAGLCSLKVLDMHDTNLMQRAISGDIGSLYSLEELNLSYCNLTEKEIPDDICCLYSLRVLDLSGNLFLGVTDAISQLSELRELGLRHCKSLLEIPKLPSSLRVLDAHDCTGIKTLSSTSVLQWQWQLNCFKSAFLQEIQEMKYRRLLSLPANGVSQGFSTVIPGSGELPEVNQRSSTSENATVNITQPYHLGCELTFLDDEIGFLDYLSCGSSCQCDHNDGVSESVWVTYYSNVAIKHRYRSDKPRFLKASFRGHVNGKPVKVEQCGIGLVHVDLENSSGVGSGKL* 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23124267 23126799 - Vvi18g1482 Vvi18g1482 781185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1482 582 SUPERFAMILY L domain-like 56 424 - -
Vvi18g1482 582 Pfam Leucine Rich Repeat 132 149 IPR011713 -
Vvi18g1482 582 Gene3D Ribonuclease Inhibitor 63 227 IPR032675 -
Vvi18g1482 582 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 244 IPR044974 GO:0006952
Vvi18g1482 582 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 215 490 IPR044974 GO:0006952
Vvi18g1482 582 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 244 - -
Vvi18g1482 582 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 215 490 - -
Vvi18g1482 582 Gene3D Ribonuclease Inhibitor 228 451 IPR032675 -
Vvi18g1482 582 SMART LRR_typ_2 350 373 IPR003591 -
Vvi18g1482 582 SMART LRR_typ_2 325 349 IPR003591 -
Vvi18g1482 582 SMART LRR_typ_2 230 254 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1482 - - - vvi:100256299 1133.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015040 0 0 0 0 0 0 0 0 0 1 1 1 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 1 4 13