Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1487 ATGGGTTCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGCTGCCTTCAATAAGCACTTTGAGAAATATGGAGAAATAACAGACTCGGTGATTATGAAAGATCGGTATACTGGTCAACCCAGGGGATTTGGGTTTGTCACCTATGCTGATCCTTCAGTTGTTGACAGTGTCATTGAAGATACACATGTTATTAACGGAAAACAGGTTGAGATTAAAAGAACCATTCCAAAAGGCTCTGGTCAATCGAAGGATTTCAAAACAAAGAAGATATTTGTTGGTGGATTACCATCTACAGTCACTGAAGATGAGTTCAAGGATTTCTTCTCCAAGTATGGGAAGGTGGAGGAGCACCAGATTATACGCGACCATGAAACCAACCGTTCGCGAGGCTTTGGATTTATAATATTTGAAAGTGAAGAGGTAGTAGATGAAATATTGTCGGAGGGGAATATGATTGATATGGCAGGCACTCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACATGTTTCCGCATTTGGTAGCAACTCTAGGGCTCGTTCTTTCAGTGATGGCTTTGGTGGATTTGGCAGCTCATACGGGAGTTATGACAGTGGGTTTGGAGCTGCTCCATATAGGGCAGCTGGAGGTCTGGGCATTTTGGAAGCAGTAACTTAG 729 43.76 MGSKLKGNTTHTGDGASPGKIFIGGLAKDTTYAAFNKHFEKYGEITDSVIMKDRYTGQPRGFGFVTYADPSVVDSVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGLPSTVTEDEFKDFFSKYGKVEEHQIIRDHETNRSRGFGFIIFESEEVVDEILSEGNMIDMAGTQVEIKKAEPKKASNPPHVSAFGSNSRARSFSDGFGGFGSSYGSYDSGFGAAPYRAAGGLGILEAVT* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23328401 23333135 + Vvi18g1487 Vvi18g1487 781190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1487 242 Gene3D - 19 97 IPR012677 -
Vvi18g1487 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 95 IPR000504 GO:0003723
Vvi18g1487 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 174 IPR000504 GO:0003723
Vvi18g1487 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 88 IPR000504 GO:0003723
Vvi18g1487 242 SMART rrm1_1 108 181 IPR000504 GO:0003723
Vvi18g1487 242 SMART rrm1_1 20 91 IPR000504 GO:0003723
Vvi18g1487 242 SUPERFAMILY RNA-binding domain, RBD 15 99 IPR035979 GO:0003676
Vvi18g1487 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Vvi18g1487 242 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 236 - -
Vvi18g1487 242 SUPERFAMILY RNA-binding domain, RBD 104 213 IPR035979 GO:0003676
Vvi18g1487 242 Gene3D - 98 220 IPR012677 -
Vvi18g1487 242 PANTHER TRANSFORMER-2-RELATED 1 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1487 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 - vvi:100246013 451.825
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1487 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001715 1 1 1 1 2 2 3 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 4 70