Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g149 ATGTCGTCGCAGGAGAGAGCTGAGGACTCTACTCCAAACGGGTCCGGTGGGAATCTCTACTCTGTGTCGTTTGTCACCCATGAAGACATCGTTAGCCACTCCTCTCTGTTCTGGGATACTCTCAGGAGTTTTCATTATGAGATGGGCACCAAATTATCAATACCTGTGATTGGTGGGAAGCAGCTGAACTTGTATGTTCTGTATGTGGAGGTCACTCGAAGGGGTGGCTATCATAAGGTCGTGATGGATAAAAAATGGAGAGAGGTGAGCTCAGTTTTCAACTTCTCTCCAACAACCACAAGTGCTTCATATGTACTGAGGAAGCACTATTACAACATCCTTAGAAAATATGAACGTGCTTACTTCTTAAAGGGTCCACCTTTAAACGCAACTGCTTCTATCCCTGTCAGCGACCTCTCGAATTTGCAGCAAACGGCTGATGCGAGGAGAAACGCCTCTAATCCTCCCATTGGAGCTCCCATTTTAGCTGTTGGGACGATAAATGCAAAGTTCGATTGCGGGTACTTGGTGTCGGTGAAAATGGGGTCTGAAACCCTGAGTGGAGTGCTGTATCATCCTGGGCAGCCAAGTTCATACACGCCAATCAGAACTTCCAATACTACTGCTTCTCAAACCCTGATTACAAACAAGGCAGCACGCAAGAAGAAGCGAAAAAGAGGTGGTGAGCCCGGCCGCCCCAAGCCCAACAGGAGTGGTTACAACTTCTTTTTCTCAGAGAAGCATGCATTATTCAAGTCCCTATATCCAGACAGAGAGAGGGAGTTTACAAAAATGATTGGAGAGAGTTGGAGCAGCCTGAGCCTGGAGGAGAAGGAAGTTTATCAGAAGCTCGGGATAAAGGACAAGGAAAGGTACAAGAAAGAGATGAAAGAATACAAGGAGAGGATGGGGGCTGTGCAGCAGCGGCCTCAGGTGGTGGTGGAAGTTGGCAGGGCTGACAATGGGGGTCCATAG 975 48.0 MSSQERAEDSTPNGSGGNLYSVSFVTHEDIVSHSSLFWDTLRSFHYEMGTKLSIPVIGGKQLNLYVLYVEVTRRGGYHKVVMDKKWREVSSVFNFSPTTTSASYVLRKHYYNILRKYERAYFLKGPPLNATASIPVSDLSNLQQTADARRNASNPPIGAPILAVGTINAKFDCGYLVSVKMGSETLSGVLYHPGQPSSYTPIRTSNTTASQTLITNKAARKKKRKRGGEPGRPKPNRSGYNFFFSEKHALFKSLYPDREREFTKMIGESWSSLSLEEKEVYQKLGIKDKERYKKEMKEYKERMGAVQQRPQVVVEVGRADNGGP* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1453376 1455960 + Vvi18g149 Vvi18g149 779852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g149 324 SMART hmgende2 232 301 IPR009071 -
Vvi18g149 324 MobiDBLite consensus disorder prediction 216 239 - -
Vvi18g149 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 233 300 IPR009071 -
Vvi18g149 324 SMART bright_3 32 123 IPR001606 GO:0003677
Vvi18g149 324 Gene3D High mobility group box domain 215 315 IPR036910 -
Vvi18g149 324 Gene3D - 25 133 IPR036431 GO:0003677
Vvi18g149 324 SMART ARID_2 28 118 - -
Vvi18g149 324 CDD ARID_HMGB9-like 34 118 IPR045303 GO:0003677
Vvi18g149 324 Pfam HMG (high mobility group) box 233 300 IPR009071 -
Vvi18g149 324 SUPERFAMILY HMG-box 230 306 IPR036910 -
Vvi18g149 324 ProSiteProfiles ARID domain profile. 31 122 IPR001606 GO:0003677
Vvi18g149 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 313 - -
Vvi18g149 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 313 - -
Vvi18g149 324 Coils Coil 289 309 - -
Vvi18g149 324 SUPERFAMILY ARID-like 32 125 IPR036431 GO:0003677
Vvi18g149 324 Pfam ARID/BRIGHT DNA binding domain 36 118 IPR001606 GO:0003677
Vvi18g149 324 CDD HMGB-UBF_HMG-box 233 297 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14290 PF01388 ARID 9.80E-21 CL0123 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g149 - - vvi:100266033 607.446