Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g149 ATGTCGTCGCAGGAGAGAGCTGAGGACTCTACTCCAAACGGGTCCGGTGGGAATCTCTACTCTGTGTCGTTTGTCACCCATGAAGACATCGTTAGCCACTCCTCTCTGTTCTGGGATACTCTCAGGAGTTTTCATTATGAGATGGGCACCAAATTATCAATACCTGTGATTGGTGGGAAGCAGCTGAACTTGTATGTTCTGTATGTGGAGGTCACTCGAAGGGGTGGCTATCATAAGGTCGTGATGGATAAAAAATGGAGAGAGGTGAGCTCAGTTTTCAACTTCTCTCCAACAACCACAAGTGCTTCATATGTACTGAGGAAGCACTATTACAACATCCTTAGAAAATATGAACGTGCTTACTTCTTAAAGGGTCCACCTTTAAACGCAACTGCTTCTATCCCTGTCAGCGACCTCTCGAATTTGCAGCAAACGGCTGATGCGAGGAGAAACGCCTCTAATCCTCCCATTGGAGCTCCCATTTTAGCTGTTGGGACGATAAATGCAAAGTTCGATTGCGGGTACTTGGTGTCGGTGAAAATGGGGTCTGAAACCCTGAGTGGAGTGCTGTATCATCCTGGGCAGCCAAGTTCATACACGCCAATCAGAACTTCCAATACTACTGCTTCTCAAACCCTGATTACAAACAAGGCAGCACGCAAGAAGAAGCGAAAAAGAGGTGGTGAGCCCGGCCGCCCCAAGCCCAACAGGAGTGGTTACAACTTCTTTTTCTCAGAGAAGCATGCATTATTCAAGTCCCTATATCCAGACAGAGAGAGGGAGTTTACAAAAATGATTGGAGAGAGTTGGAGCAGCCTGAGCCTGGAGGAGAAGGAAGTTTATCAGAAGCTCGGGATAAAGGACAAGGAAAGGTACAAGAAAGAGATGAAAGAATACAAGGAGAGGATGGGGGCTGTGCAGCAGCGGCCTCAGGTGGTGGTGGAAGTTGGCAGGGCTGACAATGGGGGTCCATAG 975 48.0 MSSQERAEDSTPNGSGGNLYSVSFVTHEDIVSHSSLFWDTLRSFHYEMGTKLSIPVIGGKQLNLYVLYVEVTRRGGYHKVVMDKKWREVSSVFNFSPTTTSASYVLRKHYYNILRKYERAYFLKGPPLNATASIPVSDLSNLQQTADARRNASNPPIGAPILAVGTINAKFDCGYLVSVKMGSETLSGVLYHPGQPSSYTPIRTSNTTASQTLITNKAARKKKRKRGGEPGRPKPNRSGYNFFFSEKHALFKSLYPDREREFTKMIGESWSSLSLEEKEVYQKLGIKDKERYKKEMKEYKERMGAVQQRPQVVVEVGRADNGGP* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1453376 1455960 + Vvi18g149 Vvi18g149 779852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g149 324 SMART hmgende2 232 301 IPR009071 -
Vvi18g149 324 MobiDBLite consensus disorder prediction 216 239 - -
Vvi18g149 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 233 300 IPR009071 -
Vvi18g149 324 SMART bright_3 32 123 IPR001606 GO:0003677
Vvi18g149 324 Gene3D High mobility group box domain 215 315 IPR036910 -
Vvi18g149 324 Gene3D - 25 133 IPR036431 GO:0003677
Vvi18g149 324 SMART ARID_2 28 118 - -
Vvi18g149 324 CDD ARID_HMGB9-like 34 118 IPR045303 GO:0003677
Vvi18g149 324 Pfam HMG (high mobility group) box 233 300 IPR009071 -
Vvi18g149 324 SUPERFAMILY HMG-box 230 306 IPR036910 -
Vvi18g149 324 ProSiteProfiles ARID domain profile. 31 122 IPR001606 GO:0003677
Vvi18g149 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 313 - -
Vvi18g149 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 313 - -
Vvi18g149 324 Coils Coil 289 309 - -
Vvi18g149 324 SUPERFAMILY ARID-like 32 125 IPR036431 GO:0003677
Vvi18g149 324 Pfam ARID/BRIGHT DNA binding domain 36 118 IPR001606 GO:0003677
Vvi18g149 324 CDD HMGB-UBF_HMG-box 233 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g149 - - - vvi:100266033 607.446
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g902 . 49 388 ARID Transcription Factor Family AT1G04880 63.0 1.4e-109 393.7
Vvi18g36 . 149 416 ARID Transcription Factor Family AT1G20910 65.3 8.6e-95 344.4
Vvi4g1345 . 1 256 ARID Transcription Factor Family AT1G20910 63.2 2.4e-89 326.2
Vvi18g149 . 20 303 ARID Transcription Factor Family AT1G76110 51.8 4.7e-81 298.5
Vvi18g36 . 139 446 ARID Transcription Factor Family AT1G76510 68.3 3.7e-115 412.1
Vvi4g1345 . 1 286 ARID Transcription Factor Family AT1G76510 66.3 6.3e-107 384.8
Vvi11g16 ECH 1 738 ARID Transcription Factor Family AT3G43240 69.3 1.9e-305 1045.0
Vvi9g26 ECH 1 744 ARID Transcription Factor Family AT3G43240 66.5 1.4e-292 1002.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14290 PF01388 ARID 9.80E-21 CL0123 Vvi TR