Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1490 ATGGCCAGATTTCAAACCCACAATTTTCTAAACAAGAATCGCAAATGGGACTCTCTCATTCGAGGCCTCTGTGTGAAGCTCAAAGACCCTGAAAAGGCGCTGCTAATATTGCAAGATTGCTTGACAAATCTCGGTATACTCCCTTCTTCCTTCACTTTTCATTCACTCATTCACAGTTTCACCTCTCAGGGGAAGATGAGTAGAGCAATTGAGGTGTTGGAGTTGATGACACATGACAAAGTCAGGTACCCATTTGGGAATTTTGTTTCTAGTTCTGTAATTTCTGGGTTTTGTAAGATTTCTAAGCCACAACTGGCTGTAGGGTTCTTTGAGAATGCCGTGAATTCGCGGGTTTTGCGGCCGAATATCGCAACTTGTACTGCACTACTGGGTGCTCTTTTTCAGTTGGGGAGAGTTAGGGAGGTTTCTGATTTGGTATCTTGGATGGAGAGGGAAGAATTCGTGTTTGATGTTGTGTTTTATAGTAGTTGGATTTGTGGGTACTTTAGGGAAGGGGTTTTAGTGGAGGCCATACGGAAACATAAAGAAATGATCGAAAAAGGAATAGCCCCGGATACTGTAAGCTATACTATACTCATAGATGGGTTTTCTAGGGAAGGGTATGTGGAGAAGGCAATTGGGTTTTTAGAAAAGATGAAGAAAGATGGGTTGAAGCCCAATTTGGTGACTTATACAGCCATAATGCTGGGGTTTTGCAAGAAAGGGAAATTAGATGAAGCGTATACCTTGTTCAAGATGGTGGAAAATTTAGGGATTGAAGTGGATGAATTTATGTATGTGACTTTGATTGATGGGTTTTGTACAAGGGGGGATATAGATTGTGTTTTTGGTCTGCTCGAGGATATGGAGAAGAGGGGGATTAGTCCAAGCATTGTTACATACAATTCTATTATTAATGGACTGTGTAAAGCAGGAAGAACGTCTGAGGCTGATGAGGTCTCGAAGGGTATCGCTGGAGATGCTGTTACATTCAGTACTTTGTTGCATGGATACATTGAAGAAGAGAATGTAAAGGGGATTCTGGAAACAAAAAGGAGATTGGAAGAAGATGGAGTTTGTATTGATCTTGTTATGTGTAACACAATTATCAAAGCTTTGCTTATGGTGGGGGCACTTGAAGACGCTTATGCATTTTATAAAGGAATGTCGGGAATGGATTTAGTTGCAGATTCTGTTACTTATTGTACAATGATTAATGGGTATTGTAGAGTGAGTAGAATAGAAGAGGCACTTGAGATATTTGATGAGTTTAGGAAGACATCAATTTCTTCATGCTATTTGTTTTTTGTGCAAGAGGGGTTTTTCCCTGGCTGCATGCGAAGTATACATGAGAATGAGAAGGAAACAATCACTGTTGCTTTTCCTGTTTCTGTACTCAAGTCACTTAAAAAAAATGGTAGAATTCTGGATGCATATAAACTTGTCATTGGTGCTGAAGAGAACTTACCTGTTATGGATTTAGTTGATTACTCAATTATGATTGATGTCCTTTGCAAGGAAGGGCATCTTGATAAGGCCTTAGATCTCTGCGCTTTTGTCAAAAAGAAGGGCATTGCTCTTAATATTTATGCTTATAATTCAGTTATAAATGGGTTGTGCCGCCAAGGTTGTCTTGTTCAAGCATTTAGACTATTTGATTCATTAGAGAAAATTGATTTGGTTCCATCTGAAATTACTTATGCTACATTGATTGATAGTTTATGTAAAGAAGGGTGTTTGCTGGATGCAAAGCAGTTGTTTGAGAAGATGGTCATTAAGGGCTTTAACCCAAATGTACGTGTTTACAACTCATTGATTGATGGCTATTGCAAGTTTGGTAACATGGAGGAAGCCTTAAACCTTCTTATTGATTTAAAGGCAAGATGCATTAAGCCTGATGAGTTCACAGTAAGTGCCTTGATTAATGGCTATTGCCATAAAGGTGACATGGAAGGGGCTCTTGGATTCTTTTTTGAGTTCAAAAAGAAAGATATTTTACCTGACTTCTTGGGTTTCATGTATTTAGTAAGAGGTCTATGTGCTAAGGGCAGGATGGAAGAGGCCCGGGGCATCTTGAGAGAGATGCTTCAAACACGCTCTGTTTTGGAGCTGATAAACAGAGTTGACACTGAGATTGAAACAGAGTCAGTAGAAAGTTTTATTATCTCTTTATGCGAGCAAGGAAGTATCCAGGAGGCCGTGACTGTCCTTAATGAAGTTGGATCTATATTTTTCCCTATAGGGAGAAGATGTAGACCTCAAAATAGAGCAGAAAAAGAAGAAAAGATTTATGAAGGGAAAGGATCTAGAGTACCTGACTTCGAATCCTACTATTCTCTAATTGCTTCACTCTGTTCGAGGGGGGAGCTACTGGAGGCTAATAGAAAGACAAGGCAGATGCTTTTGGATATGGATACAGGCTGTTAG 2427 39.56 MARFQTHNFLNKNRKWDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIHSFTSQGKMSRAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSISSCYLFFVQEGFFPGCMRSIHENEKETITVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQTRSVLELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVGSIFFPIGRRCRPQNRAEKEEKIYEGKGSRVPDFESYYSLIASLCSRGELLEANRKTRQMLLDMDTGC* 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23345965 23348947 - Vvi18g1490 Vvi18g1490 781193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Vvi18g1490 808 Pfam PPR repeat 675 696 IPR002885 -
Vvi18g1490 808 Pfam PPR repeat 159 189 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
Vvi18g1490 808 Gene3D Tetratricopeptide repeat domain 5 83 IPR011990 GO:0005515
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Vvi18g1490 808 Gene3D Tetratricopeptide repeat domain 445 578 IPR011990 GO:0005515
Vvi18g1490 808 Gene3D Tetratricopeptide repeat domain 84 204 IPR011990 GO:0005515
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Vvi18g1490 808 Gene3D Tetratricopeptide repeat domain 579 719 IPR011990 GO:0005515
Vvi18g1490 808 Gene3D Tetratricopeptide repeat domain 205 322 IPR011990 GO:0005515
Vvi18g1490 808 PANTHER ATPASE EXPRESSION PROTEIN 3 464 538 - -
Vvi18g1490 808 PANTHER ATPASE EXPRESSION PROTEIN 3 522 806 - -
Vvi18g1490 808 PANTHER ATPASE EXPRESSION PROTEIN 3 4 431 - -
Vvi18g1490 808 Gene3D Tetratricopeptide repeat domain 323 435 IPR011990 GO:0005515
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vvi18g1490 808 Pfam PPR repeat 492 516 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 49 83 IPR002885 -
Vvi18g1490 808 PANTHER FERTILITY RESTORER-LIKE 522 806 - -
Vvi18g1490 808 PANTHER FERTILITY RESTORER-LIKE 464 538 - -
Vvi18g1490 808 PANTHER FERTILITY RESTORER-LIKE 4 431 - -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 299 320 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 636 668 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 601 634 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 229 263 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 161 193 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 497 528 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 565 599 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 265 297 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 675 697 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 530 562 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 51 81 IPR002885 -
Vvi18g1490 808 TIGRFAM PPR: pentatricopeptide repeat domain 399 429 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Vvi18g1490 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Vvi18g1490 808 Pfam PPR repeat family 528 576 IPR002885 -
Vvi18g1490 808 Pfam PPR repeat family 191 239 IPR002885 -
Vvi18g1490 808 Pfam PPR repeat family 262 310 IPR002885 -
Vvi18g1490 808 Pfam PPR repeat family 597 646 IPR002885 -
Vvi18g1490 808 Pfam PPR repeat family 362 410 IPR002885 -
Vvi18g1490 808 Pfam Pentatricopeptide repeat domain 36 82 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1490 - - K17964 vvi:100266493 923.309
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .