Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1491 ATGGGATCTTTGAGCTTCGATGGTGGCGGCGGGGGCGGCGGCGGTGGTGGAGCTGAGGCTCAGCCGCCGGGATCGGTGTATAGGAGTCCTGAGGTTTTCGAGAAGTTGTGGGCTTTTATGGAGGGTGAGAGCAATAGAAGCCACAATGCGCTGATGACTGTGTGGCATCCAAAACCACATCAAAGTTGGAAGCCTTGTGTCAACCAGAGAATTTCTGCAGCAGAGTTACCAAAGTCTAATGGTTACTTTATTATTGAAGCAAATGGTGGGTTGAACCAACAGCGCTTATCGATATGTGATGCAGTGGCAGTGGCAGGATTATTGAATGCTACTCTTGTAATTCCAATGTTTCATTTAAATAGTGTTTGGCGAGACTCCAGCAAATTTGGGGACATATTTGATGAAGAATTCTTCATATACACTCTCCGAAACAATGTGAATGTGATCAGAGAGCTCCCAGGAGATGTCCTTCAGCGTTTTGACAATAATATAAGCAACATTGTAAATTTGAGACTAAAAGCTTGGTCAAGTCCAACCTACTATATTCAAAAGGTCCTTCCGAAGCTCCTGCAGAAGGGGGCTGTACGTGTTGCACCTTTCTCCAACAGATTGGCTCATGCAGTTCCTTCTGATAGCCAGAGCCTGAGATGCTTGGCCAACTTTGAAGCACTGAGATTTTCAGATCCTATACGAATGCTTGCAGAGAACATGGTTGATCGGATGATTAAGAATAGCTCAGAAAGTGGGGGGAAATATATTTCAGTGCATCTTCGGTTTGAAGAGGATATGGTTGCATTTTCCTGCTGTATGTATGATGGCGGTGAGGAAGAGAAACATGAAATGGATATTGCTCGTGAAAGAGGTTGGAGAGGAAAATTCAATAAAAGAGGTAGAATAATAAGGCCAGGTGCAATTCGGATGGATGGAAAATGCCCATTAACTCCATTAGAGGTAGGGATGATGCTTAGGGGCATGGGTTTTGATAATACTACCTCAGTTTATGTTGCAGCTGGAAAAATTTATAAAGCAGAAAGGTATATGGCCCCACTTAGACAGATGTTTCCACGATTAGAAACGAAGGATACACTGGCTTCTCCTGAGGAACTTGCTCCATTTAAGGGCCACTCCTCTAGGTTGGCTGCTCTTGATTATACAGTTTGCCTTCACAGTGAAGTATTTGTAACTACTCAAGGTGGAAATTTCCCCCACTTCTTGATGGGTCATAGGCGATACCTATATGGAGGCCATGCAAAGACAATAAAACCTGATAAAAGGAAATTAGCATTATTATTTGATAGCCCTGATATCAGTTGGGACAACTTTAAGAGCCAGATGCAAGACATGCTACGCCATAGTGATTCCAAGGGAAGTGAATTGCGAAAGCCCAGCAGCTCGCTTTATACCTTTCCAATGCCAGATTGCATGTGTAAACAAGCAGAAACAGGAATTGATAATGGTAACACAACAAAACTTGATTGA 1479 43.34 MGSLSFDGGGGGGGGGGAEAQPPGSVYRSPEVFEKLWAFMEGESNRSHNALMTVWHPKPHQSWKPCVNQRISAAELPKSNGYFIIEANGGLNQQRLSICDAVAVAGLLNATLVIPMFHLNSVWRDSSKFGDIFDEEFFIYTLRNNVNVIRELPGDVLQRFDNNISNIVNLRLKAWSSPTYYIQKVLPKLLQKGAVRVAPFSNRLAHAVPSDSQSLRCLANFEALRFSDPIRMLAENMVDRMIKNSSESGGKYISVHLRFEEDMVAFSCCMYDGGEEEKHEMDIARERGWRGKFNKRGRIIRPGAIRMDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAERYMAPLRQMFPRLETKDTLASPEELAPFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHAKTIKPDKRKLALLFDSPDISWDNFKSQMQDMLRHSDSKGSELRKPSSSLYTFPMPDCMCKQAETGIDNGNTTKLD* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23364124 23402122 + Vvi18g1491 Vvi18g1491 781194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1491 492 PANTHER - 19 490 IPR024709 -
Vvi18g1491 492 MobiDBLite consensus disorder prediction 1 25 - -
Vvi18g1491 492 Gene3D - 226 421 - -
Vvi18g1491 492 CDD O-FucT_plant 82 416 IPR024709 -
Vvi18g1491 492 PANTHER O-FUCOSYLTRANSFERASE 9 19 490 - -
Vvi18g1491 492 PIRSF UCP009360 16 480 IPR024709 -
Vvi18g1491 492 Pfam GDP-fucose protein O-fucosyltransferase 82 412 IPR019378 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1491 - - - vvi:100249307 992.645
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1491 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00035 Cam08g0034 Cec08g0216 Cco08g0089 Clacu08g0051 Cmu08g0050 Cre08g0040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00026 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010910 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31