Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1494 ATGCCGGCCACTGCTACCGCGTTTCACGGCGGCGGCCTCTCCAACCTCGCCTCCTCTTGGTCCACGAGAAAATCGATTTCCGTTGCCGCCGCTTTCGGAGGGGGAAACTGCCGCATCTGCCGGTGCTCGATTGAAGGAGGCGCCGGCGTCAGACTAGCCTGGGGCCGGACTCGGGGGGCGTGGTTCCGTGCGGGTTCGGAGGATGGGTTTACGGTAAAGACTGTGGAGAAGGGTTCGGGTGGTTGCAGCGTTGAAGATGAGGAAGATGGGGAGAAGGGTTCGGACGAGAAGCCGTTGAGATTGCAGAGGAGGCAGAGGGGTTCATCGTCGTTAAACAGTGGGGCTGTGGCTGCAAATGTTGATCTCTTGACGATTCCTGGCGTTGGTCCTAGGAATTTGAGGAAGCTTGTGGACAAAGGTATTGGTGGAGTTGCTGAGCTCAAACAACTCTATAAAGATAAGTTTTTTGGGGAATCCAGTCAGAAGATGGTGGAGTTTTTGCGGAGTTCTGTAGGAATCATTCACAGAAATCATGCTGAGAGTATAACTACTTTCATCAAAGAAAGTGTTGATGAAGAATTAAAGGACAATTCCGACTCTGATGCAAAGCCTACCCAGAAGAAACGACTCACCTTCTGTGTTGAAGGAAATATCAGTGTTGGGAAGACGACTTTCCTTCAAAGAATAGCTAATGAAACACTTGAGCTACGTGATCTTGTTGAGATTGTTCCTGAACCTATTAACAAGTGGCAGGATGTTGGACCTGATCACTTTAATATATTGGATGCATTTTATGCTGAGCCACAACGGTATGCCTATACCTTTCAGAATTACGTGTTTGTTACCAGAGTTATGCAGGAGAGAGAGTCATCTGGTGGAGTTAAGCCTCTGAGGTTGATGGAGAGGAGTGTTTTCAGTGACAGGATGGTATTTGTACGAGCTGTTCATGAAGCAAACTGGATGAATGAGATGGAGATCAGCATTTATGACTCATGGTTTGATCCCGTAGTTTCATGCTTGCCTGGGCTGATTCCTGATGGCTTCATCTATCTTAGAGCAACCCCTGATACCTGCCACAAGAGGATGAAGCTACGCAAGAGAAATGAGGAAGGGGGAGTCTCCCTAGAGTATCTACGTGATTTGCATGAAAAGCATGAGAGCTGGCTTTTCCCATTCCAAAGTGGAAATCACGGGGTATTGTCTGTCAATCAGCTACCTTTTGGCATCGATAGCTCTTTACATCCTGATATAAGAGATCGCGTGTTCTATTTGGAGGGTGATCATATGCATTCAAGTATTCAAAAGGTTCCTGCTTTGGTCCTTGACTGTGAGCCAAACATTGATTTCAGCAAAGACATTGAAGCAAAGCAACAGTATGCTCGCCAAGTTGCAGAATTTTTTGAATTTGTGAAGAAAAAGAAAGAAGTGCCATCTCTGAAAGCCAGTGAAGAGGCAGCAGCAAAGAGTAGCCAAGCGCATGTATTGCTACCCCACAAAGGTGGACTGTGGGTACCAGATGGGAAGCATTTTCCAGAATCAGCCCTCAAATCTTTGGATTTCAGACGAGCCATGTCATTTCTTTCTGGTTAG 1590 46.98 MPATATAFHGGGLSNLASSWSTRKSISVAAAFGGGNCRICRCSIEGGAGVRLAWGRTRGAWFRAGSEDGFTVKTVEKGSGGCSVEDEEDGEKGSDEKPLRLQRRQRGSSSLNSGAVAANVDLLTIPGVGPRNLRKLVDKGIGGVAELKQLYKDKFFGESSQKMVEFLRSSVGIIHRNHAESITTFIKESVDEELKDNSDSDAKPTQKKRLTFCVEGNISVGKTTFLQRIANETLELRDLVEIVPEPINKWQDVGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQERESSGGVKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSCLPGLIPDGFIYLRATPDTCHKRMKLRKRNEEGGVSLEYLRDLHEKHESWLFPFQSGNHGVLSVNQLPFGIDSSLHPDIRDRVFYLEGDHMHSSIQKVPALVLDCEPNIDFSKDIEAKQQYARQVAEFFEFVKKKKEVPSLKASEEAAAKSSQAHVLLPHKGGLWVPDGKHFPESALKSLDFRRAMSFLSG* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23429215 23433809 - Vvi18g1494 Vvi18g1494 781197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1494 529 PANTHER DEOXYNUCLEOSIDE KINASE 68 522 - -
Vvi18g1494 529 CDD dNK 212 403 IPR031314 -
Vvi18g1494 529 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 68 522 - -
Vvi18g1494 529 Pfam Deoxynucleoside kinase 212 466 IPR031314 -
Vvi18g1494 529 Gene3D - 210 469 IPR027417 -
Vvi18g1494 529 MobiDBLite consensus disorder prediction 78 112 - -
Vvi18g1494 529 MobiDBLite consensus disorder prediction 80 103 - -
Vvi18g1494 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 473 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1494 - - - vvi:100233118 1038.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1494 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012551 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29