Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1496 ATGTCTTGGTGTTTGAGTTCTTCGACTGGACAAAAAATATCTCTGCTTTCTCACAAACTCTTGAAACTCAGAGCATTCTCTCATCTGGGTTTTTCTGAATACGTAAAAGAACGATTGGGTGTTGATGATGCTAAGAGCAGAGCTTGGAATACTACTCAAACATCTGGTTCAGATGTGGAGAGCAGCATCTATACAATTCTGACAATTGACCGTTGGGAGTCTCTGAATCACATGGCATATGGGTTGAAGCAACTTAGGCCAGTTCATGGAAGACTAGCTTTGAAATTTCTCAAGTGGGTCATCAAACAACCTGGTTTGGAACTCAAACACCTCACCCATATGTATTGTCTCACTGCCCATATACTTGTTAAAGCTAGAATGTATGACTCTGCCAAATCAATTTTGAGACATTTATGCCAAATGGGTATTGGCTCAAAATCCATTTTTGGTGCCCTCATGGACACATACCCGCTTTGCAATTCAATTCCTTCAGTTTTTGACCTTCTAATTCGGGTTTATTTAAAAGAGGGTATGATTGATTATGCCGTGGAGACATTTGAATTGGTGGGTCTTGTGGGATTTAAGCCTTCGGTATATACTTGTAACATGATCCTAGCTTCAATGGTGAAGGACAAGAGGACAGAATTGGTTTGGTCATTGTTTAGGGAAATGTCGGATAAGGGAATTTGCCCAAACGTTGGTACTTTTAATATACTGATAAATGGTTTATGTGTTGAAGGGAATCTTAAGAAAGCTGGCAATCTCTTGAAACAGATGGAAGAGAATGGTTTCGTTCCCACCATAGTTACTTATAATACTTTGCTCAATTGGTATTGCAAGAAGGGAAGGTATAAAGCGGCTATTGAGTTGATTGATTATATGATTTGTAAAGGTATTGAAGCTGATGTCTGTACGTATAATGTGTTTATCGATAATTTGTGTACAAACCACAGGAGTGCAAAAGCTTATTTATTGTTGAAAAAGATGAGGAAGGAGATGATATCCCCAAATGAAGTCACATATAATACTCTTATTAATGGGTTTGTTAAAGAGGGAAAGATTGGAGTTGCTGCTCAAGTTTTTAATGAGATGTCAAAGTTTGATCTTTCACCAAACTGTGTTACTTATAATGCTTTGATTGGTGGCCATTGTCATGTGGGTGATTTTGAGGAAGCTCTGAGGCTTTTAGATCATATGGAAGCAGCTGGACTCAGACTTAATGAACATGGAAATGTTACAGAAGCAATGAAAGTTTATGCTGTCATGAACTGCAATGGCCATGGTGCTGACCATTTCACGTGTAATGTGTTGGTTTCTTCTCTCTGTAGAGATGGAAAGTTAGGGGAGGCAGAAAAATTTCTTTGTCATATGAGTAGGATTGGCCTAGTTCCTAACTCCATCACTTATGACTGTATTATAAATGGCTATGGCAGTATTGGGGATCCTTTAAATGCTTTTTCCTTCTTTGATGACATGATCAAATGTGGTCAGCATCCAAGTTTTTTCACATATGGAAGTCTACTAAAAGGATTATGCAAGGGGGGAAATTTGGTGGAAGCAAAAAAGTTCTTGAATAGACTACATTACATTCCTGGTGCTGTAGACTCTGTTATGTACAATACATTACTAGCTGAGACATGTAAATCAGGCAATTTGCATGAGGCAGTGGCCCTCTTTGATAAGATGGTCCAGAATAATGTGCTGCCTGATAGCTACACATACTCTAGTCTTTTGACTGGGTTATGTAGGAAGGGCAAGGCAGTTACTGCAGTTTGTCTATTTGGAACAGCCATGGGAAGGGGAACCTTGTTTCCTAACCATGTTATGTACACATGTTTGGTTGACGGTCTTTCCAAGGCAGGCCATCCAAAGGCTGCTTTCTATTTCTTTGAAGAGATGATGAAGAAAGGTACATGCCCTGATACAGTTGCATTCAATGCAATTATAGACAGTTGCTCAAGAAGAGGTCAAATGATGAAGGCAAATGATTTTTTCTCCACAATGAGGTGGTGGGGTGTGTGTCCTAATCTGGCTACTTATAATATTCTTTTGCACGGGTTTTCAAAAAAACAGGCTTTGTTAAGGTACTTATCATTATACAGTACCATGATGAGGGAGGGTATTTTCCCTGATAAGTTGACATTCCATTCTCTCATTCTTGGACTTTCAAAGTCAGGTATACCGGACCTTGGGGTTAAGCTTTTGGGAAAGATGATAATGGAAGAATCTACTGTGGTTTTACATGAAATGTTGGAAAATGGTGTTATTCCAAAACATGCCCAATATATTACTTTGATTAATGGCATGTGTAGAGTTGGAGATATACAAGGAGCATTCAAGCTAAAAGATGAGATGGAGGCACTTGGTTTTGGCTCCCATGAAGTAGCTGAGAGTGCTATGGTTAGAGGGCTTCTGCACTGTGGAAAGACTGAAGATGCAATGCTTGTTTTGGATCATATGCTTAGGATGCGACTTCTTCCCACTATTGCCACATTCACAACTCTAATGCATAGATTCTGTAGAGATGCTAAGATTGCAGAGGCTTTAAAGTTGAAGGGTGTAATGGAGCTTTGTGGTCTGAAGCTTGATGTTGTTGCTTACAATGTTCTCATTATGGGCATGTGTGCTAATGGGGATTCTGCAGCTGCATTTGAGCTATATGAGGAAATGAGACATAGGGATCTTTGTCCGAATATTACCACCTATGCTGTTCTTGTTGATGCCATTTCCGCTGCAAATAATCTTATTCAGGGTGAAAAGCTTTTGACTGATCTACAGGAGCGGGGATTGATATCTTGGGGTGGTAGCACCCAACATTTGGACAAGGAATTGACAGTTGCCATGGGAAAATTAAATTATATAAGGTTCAAAAGAAGAAATAGTGTCAATAACAAGACAAATTAG 2904 39.29 MSWCLSSSTGQKISLLSHKLLKLRAFSHLGFSEYVKERLGVDDAKSRAWNTTQTSGSDVESSIYTILTIDRWESLNHMAYGLKQLRPVHGRLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSIFGALMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLISWGGSTQHLDKELTVAMGKLNYIRFKRRNSVNNKTN* 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23461969 23465483 + Vvi18g1496 Vvi18g1496 781199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 605 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat family 640 689 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat family 266 315 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat family 196 244 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat family 863 908 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat family 336 384 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat family 535 583 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat family 464 513 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 235 267 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 199 233 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 865 899 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 679 711 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 269 303 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 762 790 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 467 500 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 304 338 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 643 676 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 502 527 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 339 373 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Vvi18g1496 967 TIGRFAM PPR: pentatricopeptide repeat domain 537 570 IPR002885 -
Vvi18g1496 967 Gene3D Tetratricopeptide repeat domain 532 597 IPR011990 GO:0005515
Vvi18g1496 967 Gene3D Tetratricopeptide repeat domain 743 790 IPR011990 GO:0005515
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Vvi18g1496 967 SUPERFAMILY HCP-like 239 566 - -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 793 827 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 758 792 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Vvi18g1496 967 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 423 743 - -
Vvi18g1496 967 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 744 796 - -
Vvi18g1496 967 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 56 410 - -
Vvi18g1496 967 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 797 882 - -
Vvi18g1496 967 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 56 410 - -
Vvi18g1496 967 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 423 743 - -
Vvi18g1496 967 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 744 796 - -
Vvi18g1496 967 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 797 882 - -
Vvi18g1496 967 Gene3D Tetratricopeptide repeat domain 598 742 IPR011990 GO:0005515
Vvi18g1496 967 Gene3D Tetratricopeptide repeat domain 409 531 IPR011990 GO:0005515
Vvi18g1496 967 Gene3D Tetratricopeptide repeat domain 330 408 IPR011990 GO:0005515
Vvi18g1496 967 Gene3D Tetratricopeptide repeat domain 810 952 IPR011990 GO:0005515
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat 714 740 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat 798 823 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat 831 859 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat 166 187 IPR002885 -
Vvi18g1496 967 Gene3D Tetratricopeptide repeat domain 212 329 IPR011990 GO:0005515
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 863 897 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Vvi18g1496 967 Gene3D Tetratricopeptide repeat domain 83 211 IPR011990 GO:0005515
Vvi18g1496 967 Pfam PPR repeat 603 633 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat 429 457 IPR002885 -
Vvi18g1496 967 Pfam PPR repeat 755 786 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Vvi18g1496 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 828 862 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1496 - - K17964 vvi:104882717 992.645
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1496 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .