Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1498 | ATGTCTAATGTTTATCACTCTTTTCGGGCATATTGCTTAAACCTCAGCTGCGATAAGTTGATCAAGTTAATTAAGATCGAATACGTAGTTCCGTACGGACGCAGCGCCAAAATGGAGGTAGATGATGTAGAGGAGGATGAAGCCGCCGAGAATAAACCAATGGTCATGAACCCCAAAGCAACCGCCGTAAAGCCCAGGTACAGAGAGTGCATGAGAAACCATGCCGCCTCCATCGGTGGCCATGCCAGCGACGGCTGCGGCGAGTTCATGCCCTCCGGCGGTGGCGGCGGAGGTGATGCGGCTTCGCTGACGTGCGCGGCGTGCGGGTGCCACCGCAACTTCCATCGACGGGAAGTACCCGGTGCAGCGCACCTTCATCACCACCTCATGCACCCCGGACCCCCTCATGCTCATCCCATGTTGCTCTATAACACCACTCCCAGCCCGAAGAATGCTTCCGTGCATGCGCTTCCTCATAAGTTCCTCGGTAGGGGGGATGTGCAGATAGCCACGATGATGACGACGACGAAGAACAAGAGATTCAGGACCAAGTTCACGCAAGAGCAGAAAGAGCGAATGCTGGAGTTGGCCGAGAGGCTGGGTTGGAGGATACAGAAGCAGGACGACGTCGTTTTGTCCCAGTTCTGCTCCGAGCTCGGGATTAAGCGTAATGTCCTGAAGGTGTGGATGCACAACAACAAGAATGCACACCGCCGCAGAGAACCTCCACCCGAGTCTCCTCCTCCTCCTCCGCCACCACCTCCACCGTCCATGGCGCCGCCCCAAGCTGCCGGAGTGTGA | 801 | 56.55 | MSNVYHSFRAYCLNLSCDKLIKLIKIEYVVPYGRSAKMEVDDVEEDEAAENKPMVMNPKATAVKPRYRECMRNHAASIGGHASDGCGEFMPSGGGGGGDAASLTCAACGCHRNFHRREVPGAAHLHHHLMHPGPPHAHPMLLYNTTPSPKNASVHALPHKFLGRGDVQIATMMTTTKNKRFRTKFTQEQKERMLELAERLGWRIQKQDDVVLSQFCSELGIKRNVLKVWMHNNKNAHRRREPPPESPPPPPPPPPPSMAPPQAAGV* | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 23508907 | 23510066 | - | Vvi18g1498 | Vvi18g1498 | 781201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1498 | 266 | MobiDBLite | consensus disorder prediction | 245 | 266 | - | - | |
Vvi18g1498 | 266 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 67 | 118 | IPR006456 | - | |
Vvi18g1498 | 266 | Gene3D | - | 168 | 238 | - | - | |
Vvi18g1498 | 266 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 66 | 119 | IPR006456 | - | |
Vvi18g1498 | 266 | Pfam | ZF-HD protein dimerisation region | 66 | 119 | IPR006456 | - | |
Vvi18g1498 | 266 | SUPERFAMILY | Homeodomain-like | 172 | 239 | IPR009057 | - | |
Vvi18g1498 | 266 | MobiDBLite | consensus disorder prediction | 234 | 266 | - | - | |
Vvi18g1498 | 266 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 179 | 235 | IPR006455 | - | |
Vvi18g1498 | 266 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 49 | 238 | - | - | |
Vvi18g1498 | 266 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 49 | 238 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14293 | PF04770 | ZF-HD_dimer | 7.60E-29 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1498 | - | - | vvi:100251158 | 370.548 |