Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1498 ATGTCTAATGTTTATCACTCTTTTCGGGCATATTGCTTAAACCTCAGCTGCGATAAGTTGATCAAGTTAATTAAGATCGAATACGTAGTTCCGTACGGACGCAGCGCCAAAATGGAGGTAGATGATGTAGAGGAGGATGAAGCCGCCGAGAATAAACCAATGGTCATGAACCCCAAAGCAACCGCCGTAAAGCCCAGGTACAGAGAGTGCATGAGAAACCATGCCGCCTCCATCGGTGGCCATGCCAGCGACGGCTGCGGCGAGTTCATGCCCTCCGGCGGTGGCGGCGGAGGTGATGCGGCTTCGCTGACGTGCGCGGCGTGCGGGTGCCACCGCAACTTCCATCGACGGGAAGTACCCGGTGCAGCGCACCTTCATCACCACCTCATGCACCCCGGACCCCCTCATGCTCATCCCATGTTGCTCTATAACACCACTCCCAGCCCGAAGAATGCTTCCGTGCATGCGCTTCCTCATAAGTTCCTCGGTAGGGGGGATGTGCAGATAGCCACGATGATGACGACGACGAAGAACAAGAGATTCAGGACCAAGTTCACGCAAGAGCAGAAAGAGCGAATGCTGGAGTTGGCCGAGAGGCTGGGTTGGAGGATACAGAAGCAGGACGACGTCGTTTTGTCCCAGTTCTGCTCCGAGCTCGGGATTAAGCGTAATGTCCTGAAGGTGTGGATGCACAACAACAAGAATGCACACCGCCGCAGAGAACCTCCACCCGAGTCTCCTCCTCCTCCTCCGCCACCACCTCCACCGTCCATGGCGCCGCCCCAAGCTGCCGGAGTGTGA 801 56.55 MSNVYHSFRAYCLNLSCDKLIKLIKIEYVVPYGRSAKMEVDDVEEDEAAENKPMVMNPKATAVKPRYRECMRNHAASIGGHASDGCGEFMPSGGGGGGDAASLTCAACGCHRNFHRREVPGAAHLHHHLMHPGPPHAHPMLLYNTTPSPKNASVHALPHKFLGRGDVQIATMMTTTKNKRFRTKFTQEQKERMLELAERLGWRIQKQDDVVLSQFCSELGIKRNVLKVWMHNNKNAHRRREPPPESPPPPPPPPPPSMAPPQAAGV* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23508907 23510066 - Vvi18g1498 Vvi18g1498 781201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1498 266 MobiDBLite consensus disorder prediction 245 266 - -
Vvi18g1498 266 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Vvi18g1498 266 Gene3D - 168 238 - -
Vvi18g1498 266 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 119 IPR006456 -
Vvi18g1498 266 Pfam ZF-HD protein dimerisation region 66 119 IPR006456 -
Vvi18g1498 266 SUPERFAMILY Homeodomain-like 172 239 IPR009057 -
Vvi18g1498 266 MobiDBLite consensus disorder prediction 234 266 - -
Vvi18g1498 266 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 179 235 IPR006455 -
Vvi18g1498 266 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 238 - -
Vvi18g1498 266 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 49 238 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14293 PF04770 ZF-HD_dimer 7.60E-29 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1498 - - vvi:100251158 370.548