Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1499 ATGGTGAGTCCATCATTACTATTATTTTTTTCATCAGTCTCAGGTAACTGTTTGTTCGGCCAGAAAGAGCTCGTTCAACAATCAGAAAGAGTAAAATCTGTGGATCTACATCCTAAGGAACCATGGATTCTAGCAAGTTTGTATTCAGGAACTGTGTGCATCTGGAACTACCTCTCGCAGGAACTTGTAAAGCCTTTCAAGGTCGCGGAATCACCAGTTCGGTCAGCAAAGTTTATAGCATGCAAACAATGGGTTGTTACTGGGGCTGATGACAAGTTTATCCGAGTCTTCGACTACAATACAACGGAGAAGATTGCAGAATTTGAGGCTCATACTGATTTCATTAGGAGTGTTGCAGTCCATCCTACCCTTCCATATGTGCTGTCAGCTTCTGATGACATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGAGTGTACTCAAACGTTCCAGGGACATGCCCACTATGTGATGCAAGTGGCATTTAGTCCCAAAGACGCAAACACTTTTGCAAGTGCTTCTCTTGATGGCACCATAAAGATTTGGAATCTCAGCTCACCTGCGCCAGACTTTACACTGGATGGGCATTCAAAAGGAGTGAATTGCATTGATTACTTCATGAGAGGCTCGAAACCATATCTGATCTCGGGTTCGGATGACCACACTGCTAAGGTGTGGGATTATGAAGCCAAGAGTTGTGTACAAACACTGGAAGGCCACACAAATAATGTTTCTGCAGTGTGTGTTCACCCTGAACTTCCCCTCATCATTACAGGTTCTGAGGATGGAAATGTTCACATATGGGATGGAGCTACTTACAGGCTGGAGAACACCCTGAACTATGGTTTTGAAAGAGTTTGGGCTCTTGGGTGCATGAAAGGCTCAAACAGGGTTGTGATTGGCTATGACAAAGGAACCATTATGGTAAAAGTTCTCCGTTCTCAGAGTGGGGGTTTCATGGGCATCCAGGTTGAGGAGGATGAGAAGAAGGAATGTTGA 1002 44.61 MVSPSLLLFFSSVSGNCLFGQKELVQQSERVKSVDLHPKEPWILASLYSGTVCIWNYLSQELVKPFKVAESPVRSAKFIACKQWVVTGADDKFIRVFDYNTTEKIAEFEAHTDFIRSVAVHPTLPYVLSASDDMLIKLWDWEKGWECTQTFQGHAHYVMQVAFSPKDANTFASASLDGTIKIWNLSSPAPDFTLDGHSKGVNCIDYFMRGSKPYLISGSDDHTAKVWDYEAKSCVQTLEGHTNNVSAVCVHPELPLIITGSEDGNVHIWDGATYRLENTLNYGFERVWALGCMKGSNRVVIGYDKGTIMVKVLRSQSGGFMGIQVEEDEKKEC* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23528928 23531125 + Vvi18g1499 Vvi18g1499 781202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1499 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 187 IPR001680 GO:0005515
Vvi18g1499 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 270 IPR001680 GO:0005515
Vvi18g1499 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 140 IPR001680 GO:0005515
Vvi18g1499 333 PANTHER COATOMER 21 315 - -
Vvi18g1499 333 SMART WD40_4 21 56 IPR001680 GO:0005515
Vvi18g1499 333 SMART WD40_4 59 98 IPR001680 GO:0005515
Vvi18g1499 333 SMART WD40_4 231 270 IPR001680 GO:0005515
Vvi18g1499 333 SMART WD40_4 101 140 IPR001680 GO:0005515
Vvi18g1499 333 SMART WD40_4 144 184 IPR001680 GO:0005515
Vvi18g1499 333 SMART WD40_4 187 228 IPR001680 GO:0005515
Vvi18g1499 333 CDD WD40 30 310 - -
Vvi18g1499 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 270 - -
Vvi18g1499 333 Gene3D - 24 313 IPR015943 GO:0005515
Vvi18g1499 333 PANTHER COATOMER SUBUNIT BETA' 21 315 - -
Vvi18g1499 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 187 - -
Vvi18g1499 333 PRINTS G protein beta WD-40 repeat signature 171 185 IPR020472 -
Vvi18g1499 333 PRINTS G protein beta WD-40 repeat signature 215 229 IPR020472 -
Vvi18g1499 333 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Vvi18g1499 333 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Vvi18g1499 333 Pfam WD domain, G-beta repeat 233 270 IPR001680 GO:0005515
Vvi18g1499 333 Pfam WD domain, G-beta repeat 29 56 IPR001680 GO:0005515
Vvi18g1499 333 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Vvi18g1499 333 Pfam WD domain, G-beta repeat 63 98 IPR001680 GO:0005515
Vvi18g1499 333 Pfam WD domain, G-beta repeat 145 184 IPR001680 GO:0005515
Vvi18g1499 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 237 IPR001680 GO:0005515
Vvi18g1499 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 230 - -
Vvi18g1499 333 SUPERFAMILY WD40 repeat-like 23 310 IPR036322 GO:0005515
Vvi18g1499 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1499 K17302 COPB2, SEC27; coatomer subunit beta' - vvi:100256305 618.616
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016413 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 7