Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1500 ATGATTATTTTATGTATTTATAATATTTTAAATATCTATAAAGAACTTGTTCAACAATCGGAAAGCGTAAAATCTGTGGATCTACATCCAAAGGAACCATGGATTCTAGCAAGTTTGTATTCAGGAACTGTGTATATCTGGAACTACCATTCACAGGAACTTTTAAAGTCTTTCAAGGTCGCCGAATCACCAGTTCGGTCAGCCAAGTTTATAGCATGCAAACAATGGATTGTTACTGGGGCTGATGACAAGTTTATCCGAGTCTTCGACTACAATACAATGGAGAAGATTGCAGAATTTGAGTCTCATACTGATTTCATTAGGAGTGTTGCAGTCCATCCTACCCTTCCATATGTGCTGTCAGCTTCTGATGACATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGAGTGTACTCAAACGTTCCAGGGACATGCCCACTATGTGATGCAAGTGGCATTTAGTCCCAAAGACGCAAACACTTTTGCAAGTGCTTCTCTTGATGGCACCATAAAGATTTGGAATCTCAGCTCACCTGCGCCAGACTTTACACTGGATGGGCATTCAAAAGGAGTGAATTGCATTGATTACTTCATGAGAGGCTCGAAACCATATCTGATCTCGGGTTCGGATGACCACACTGCTAAGGTGTGGGATTATGAAGCCAAGAGTTGTGTACAAACACTGGAAGGCCACACAAATAATGTTTCTGCAGTGTGTGTTCACTCTGAACTTCCCCTCATCATTACAGGTTCTGAGGATGGAAATGTTCACATATGGGATGGAGCTACTTACAGGCTGGAGAACACCCTGAACTATGGTTTTGAAAGAGTTTGGGCTTTTGGGTGCATGAAAGGATCAAACAGGATTGTGATTGGCTATGACAAAGGAACCATTATGGTAAAAGTTCTCGGTTCTCACATTGGGGTTCCATGGGCATCCGGGTTGAGGAGGAAGAGAAAAAGAAATGTTGATTTGTACAACTAA 990 41.92 MIILCIYNILNIYKELVQQSESVKSVDLHPKEPWILASLYSGTVYIWNYHSQELLKSFKVAESPVRSAKFIACKQWIVTGADDKFIRVFDYNTMEKIAEFESHTDFIRSVAVHPTLPYVLSASDDMLIKLWDWEKGWECTQTFQGHAHYVMQVAFSPKDANTFASASLDGTIKIWNLSSPAPDFTLDGHSKGVNCIDYFMRGSKPYLISGSDDHTAKVWDYEAKSCVQTLEGHTNNVSAVCVHSELPLIITGSEDGNVHIWDGATYRLENTLNYGFERVWAFGCMKGSNRIVIGYDKGTIMVKVLGSHIGVPWASGLRRKRKRNVDLYN* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23531600 23537679 + Vvi18g1500 Vvi18g1500 781203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1500 329 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Vvi18g1500 329 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Vvi18g1500 329 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Vvi18g1500 329 CDD WD40 22 302 - -
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 229 IPR001680 GO:0005515
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 222 - -
Vvi18g1500 329 PANTHER COATOMER 10 305 - -
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 262 IPR001680 GO:0005515
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 57 IPR001680 GO:0005515
Vvi18g1500 329 SUPERFAMILY WD40 repeat-like 13 302 IPR036322 GO:0005515
Vvi18g1500 329 PANTHER COATOMER SUBUNIT BETA' 10 305 - -
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 179 IPR001680 GO:0005515
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 262 - -
Vvi18g1500 329 Gene3D - 16 305 IPR015943 GO:0005515
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 132 IPR001680 GO:0005515
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 132 - -
Vvi18g1500 329 Pfam WD domain, G-beta repeat 53 90 IPR001680 GO:0005515
Vvi18g1500 329 Pfam WD domain, G-beta repeat 184 220 IPR001680 GO:0005515
Vvi18g1500 329 Pfam WD domain, G-beta repeat 21 48 IPR001680 GO:0005515
Vvi18g1500 329 Pfam WD domain, G-beta repeat 96 132 IPR001680 GO:0005515
Vvi18g1500 329 Pfam WD domain, G-beta repeat 137 176 IPR001680 GO:0005515
Vvi18g1500 329 Pfam WD domain, G-beta repeat 225 262 IPR001680 GO:0005515
Vvi18g1500 329 SMART WD40_4 93 132 IPR001680 GO:0005515
Vvi18g1500 329 SMART WD40_4 136 176 IPR001680 GO:0005515
Vvi18g1500 329 SMART WD40_4 9 48 IPR001680 GO:0005515
Vvi18g1500 329 SMART WD40_4 51 90 IPR001680 GO:0005515
Vvi18g1500 329 SMART WD40_4 179 220 IPR001680 GO:0005515
Vvi18g1500 329 SMART WD40_4 223 262 IPR001680 GO:0005515
Vvi18g1500 329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1500 K17302 COPB2, SEC27; coatomer subunit beta' - vvi:100256305 613.609
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1500 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016413 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 7