Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1501 ATGTTTAATGTTAAATTGTTTTTCTCTCATTTGAGACTCACATTTTCATCACTTATTTTTCCTACAATTCAATCAGAAAGAGTCAAATCTGTGGATCTACATCCTAAGGAACCATGGATTCTAGCAAGTTTGTATTCAGGAACTGTGTGTATCTGGAACTACCACTCGCAGGAACTTGTAAAGTCTTTCAAGGTCGCGGAATCACCAGTTCGCTCAGCAAAGTTTATAGCATGCAAACAATGGGTTGTTACTGGGGCTGATGACAAGTTTATCCGCATCTTCGACTACAATACAATGGAGAAGATTGCAGAATTTGAGGCTCATACTGATTTCATTAGGAGTGTTGCAGTCCATCCTACCCTTCCATATGTGCTGTCAGCTTCTGATGACATGCTAATAAAGCTTTGGGATTGGGAGAAGGGTTGGGAGTGCACTCAAACGTTCAAGGGACATGCCCACTATGTGATGCAAGTGGCATTTAGTCCCAAAGACGCACACACTTTTGCAAGTGCGTCGCTTGATGGCACCATAAAGGTTTGGAATCTCAGCTCACCTGCTCCAGACTTTACACTGGATGGGCATTCAAAAGGAGTGAATTGTATTGATTACTTCATGAGAGGCTCTAAACCATATCTGATCTCCGGTTCGGATGACCATACTGCTAAGGTTTGGGATTATCAAGCCAAGAGTTGTGTACAAACACTGGAAGGACACACAAATAATGTTTCTGCAGTGTGTGTTCACCCTGAACTTCCCCTCATCATTACAGGTTCTGAGGATGGGAACGTTCACATATGGGATGGAGCTACTTACAGGCTTGGGAACACACTGAACTATGGTTTTGAAAGAGTTTGGGCTTTTGGGTGCATGAAAGGCTCAAACAGGGTTGTGATTGGCTATGACAAAGGAACCATTATGATAAAAGTTCTCAGTTCTCACAGTGGGGGTTCCATGGGCATCCGGGTTGAGGAGCAAGAGAAGAAGGAATGTTGA 993 43.2 MFNVKLFFSHLRLTFSSLIFPTIQSERVKSVDLHPKEPWILASLYSGTVCIWNYHSQELVKSFKVAESPVRSAKFIACKQWVVTGADDKFIRIFDYNTMEKIAEFEAHTDFIRSVAVHPTLPYVLSASDDMLIKLWDWEKGWECTQTFKGHAHYVMQVAFSPKDAHTFASASLDGTIKVWNLSSPAPDFTLDGHSKGVNCIDYFMRGSKPYLISGSDDHTAKVWDYQAKSCVQTLEGHTNNVSAVCVHPELPLIITGSEDGNVHIWDGATYRLGNTLNYGFERVWAFGCMKGSNRVVIGYDKGTIMIKVLSSHSGGSMGIRVEEQEKKEC* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23538114 23547724 + Vvi18g1501 Vvi18g1501 781204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1501 330 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 267 IPR001680 GO:0005515
Vvi18g1501 330 Pfam WD domain, G-beta repeat 230 267 IPR001680 GO:0005515
Vvi18g1501 330 Pfam WD domain, G-beta repeat 189 225 IPR001680 GO:0005515
Vvi18g1501 330 Pfam WD domain, G-beta repeat 28 53 IPR001680 GO:0005515
Vvi18g1501 330 Pfam WD domain, G-beta repeat 59 95 IPR001680 GO:0005515
Vvi18g1501 330 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Vvi18g1501 330 Pfam WD domain, G-beta repeat 142 181 IPR001680 GO:0005515
Vvi18g1501 330 PANTHER COATOMER 24 311 - -
Vvi18g1501 330 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 137 IPR001680 GO:0005515
Vvi18g1501 330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 184 - -
Vvi18g1501 330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 105 137 - -
Vvi18g1501 330 PANTHER COATOMER SUBUNIT BETA' 24 311 - -
Vvi18g1501 330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 225 - -
Vvi18g1501 330 SUPERFAMILY WD40 repeat-like 24 307 IPR036322 GO:0005515
Vvi18g1501 330 Gene3D - 22 310 IPR015943 GO:0005515
Vvi18g1501 330 PRINTS G protein beta WD-40 repeat signature 168 182 IPR020472 -
Vvi18g1501 330 PRINTS G protein beta WD-40 repeat signature 212 226 IPR020472 -
Vvi18g1501 330 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Vvi18g1501 330 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 234 IPR001680 GO:0005515
Vvi18g1501 330 SMART WD40_4 141 181 IPR001680 GO:0005515
Vvi18g1501 330 SMART WD40_4 98 137 IPR001680 GO:0005515
Vvi18g1501 330 SMART WD40_4 184 225 IPR001680 GO:0005515
Vvi18g1501 330 SMART WD40_4 16 53 IPR001680 GO:0005515
Vvi18g1501 330 SMART WD40_4 228 267 IPR001680 GO:0005515
Vvi18g1501 330 SMART WD40_4 56 95 IPR001680 GO:0005515
Vvi18g1501 330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 267 - -
Vvi18g1501 330 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 184 IPR001680 GO:0005515
Vvi18g1501 330 CDD WD40 27 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1501 K17302 COPB2, SEC27; coatomer subunit beta' - vvi:100256305 631.713
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016413 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 7