Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1502 ATGCTTGGGGTTAACTGTTTGTTCGGCCAGAAAGAACTTGTTCAACAATCAGAAAGAGTCAAATCTGTGGATCTACATCCTAAGGAACCATGGATTCTAGCAAGTTTGTATTCAGGAACTGTGTGTATCTGGAACTACCACTCTCAGGAACTTGTAAAATCTTTCAAGGTCGCGGAATCACCAGTTCGATCAGCAAAATTTATAGCATGCAAGCAATGGGTTGTTACTGGGGCTGATGACAAGTTTATCCGCGTCTTCAACTACAATACAATGGAGAAGATTGCAGAATTTGAGGCTCATACTGATTTCATTAGGAGTGTTGCAGTCCATCCTACCCTTCCATGTGTGCTGTCAGCTTCTGATGACATGCTCATAAAGCTTTGGGATTGGGAGAAGGGCTGGGAGTGCACTCAAACGTTCCAGGGACATGCCCACTATGTGATGCAAGTGGCATTTAGTCCCAAAGACGTAAACACTTTCGCAAGTGCATCTCTTGATGGCACCATAAAGGTTTGGAATCTCAGCTCTCCTGCTCCAGACTTTACACTGGATGGGCATTCAAAAGGAGTGAATTGTATTGATTACTTCATGAGAGGCTCTAAACCATATCTGATCTCGGGTTCGGATGACCACACTGCTAAGGTGTGGGATTATGAAGCCAAAAGCTGTGTACAAACACTGGAAGGCCACACAAATAATGTTTCTGCAGTGTGTGTTCACCCTGAACTTCCCCTCATCATTACAGGTTCTGAGGATGGGAACGTTCACATATGGGATCGAGCTACTTACAGGCTTGAGAACACCCAGAGCTATGGTCTTGAAAGAGTTTGGGCTTTTGGGTGCACGAAAGAATCAAACAGGGTTGTGATTGGCTATGACAAAGGAACCATTATGATAAAAGTTCTCAGTTCTCACAGTGGGGGTTCCATGGGCATACGGGTTGAGGAGGAAGAGAAGAAGGAATGTTGA 969 44.58 MLGVNCLFGQKELVQQSERVKSVDLHPKEPWILASLYSGTVCIWNYHSQELVKSFKVAESPVRSAKFIACKQWVVTGADDKFIRVFNYNTMEKIAEFEAHTDFIRSVAVHPTLPCVLSASDDMLIKLWDWEKGWECTQTFQGHAHYVMQVAFSPKDVNTFASASLDGTIKVWNLSSPAPDFTLDGHSKGVNCIDYFMRGSKPYLISGSDDHTAKVWDYEAKSCVQTLEGHTNNVSAVCVHPELPLIITGSEDGNVHIWDRATYRLENTQSYGLERVWAFGCTKESNRVVIGYDKGTIMIKVLSSHSGGSMGIRVEEEEKKEC* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23559861 23561862 + Vvi18g1502 Vvi18g1502 781205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1502 322 Gene3D - 13 302 IPR015943 GO:0005515
Vvi18g1502 322 PANTHER COATOMER 10 303 - -
Vvi18g1502 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 226 IPR001680 GO:0005515
Vvi18g1502 322 PANTHER COATOMER SUBUNIT BETA' 10 303 - -
Vvi18g1502 322 SUPERFAMILY WD40 repeat-like 12 299 IPR036322 GO:0005515
Vvi18g1502 322 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Vvi18g1502 322 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Vvi18g1502 322 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Vvi18g1502 322 Pfam WD domain, G-beta repeat 134 173 IPR001680 GO:0005515
Vvi18g1502 322 Pfam WD domain, G-beta repeat 51 87 IPR001680 GO:0005515
Vvi18g1502 322 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Vvi18g1502 322 Pfam WD domain, G-beta repeat 222 259 IPR001680 GO:0005515
Vvi18g1502 322 Pfam WD domain, G-beta repeat 93 129 IPR001680 GO:0005515
Vvi18g1502 322 Pfam WD domain, G-beta repeat 18 45 IPR001680 GO:0005515
Vvi18g1502 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 259 - -
Vvi18g1502 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 176 IPR001680 GO:0005515
Vvi18g1502 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 176 - -
Vvi18g1502 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 129 IPR001680 GO:0005515
Vvi18g1502 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Vvi18g1502 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 129 - -
Vvi18g1502 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 219 - -
Vvi18g1502 322 CDD WD40 19 299 - -
Vvi18g1502 322 SMART WD40_4 220 259 IPR001680 GO:0005515
Vvi18g1502 322 SMART WD40_4 48 87 IPR001680 GO:0005515
Vvi18g1502 322 SMART WD40_4 90 129 IPR001680 GO:0005515
Vvi18g1502 322 SMART WD40_4 10 45 IPR001680 GO:0005515
Vvi18g1502 322 SMART WD40_4 133 173 IPR001680 GO:0005515
Vvi18g1502 322 SMART WD40_4 176 217 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1502 K17302 COPB2, SEC27; coatomer subunit beta' - vvi:100261402 652.899
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016413 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 7