Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1505 ATGGCTTCTGCGAATCGTCGAAGGGCGTCTTCTTCTTCTACTCCTGTCCGTCCATGGGATTACGAAGTTTTCTTGAGCTTTAGGGGTGAAGATACCCGCAGAAATTTCACAGGTCATCTCTATGCAGCGTTGATTCGGAAAGGGATTGTTACCTTTAGAGACGATGAAGGACTATCAAGGGGAGAGGAGATCGCACCAAGTCTTCTTACAGCTATTGAGAAGTCAAGGTGCGCTCTCGTGATTCTCTCCGAACATTATGCCGACTCCAGATGGTGTTTGGAGGAACTGGCGAAGATCATGGAGTGGAGGGCAGAAATGGGATTGATAGTTTATCCAGTTTTCTATCATGTGGATCCTTCCCATGTGAGACATCAGAGGGGCCATTACGGAGAAGCATTAGCCGATCATGAAAGAAATGGGTCTGGTCACCAGACACAAAGGTGGAGGGCAGCTTTGACAGAAGTGGCCAATCTTTCTGGATGGCATGCAGAAAATGGGTCTGAGTCAGAAGTTGTTAATGATATTACTCGCACTATTTTGGCAAGATTTACTCGGAAACATTTACATGTTGACAAAAACCTCGTTGGGATGGATGATCGTTTGAATGAAGTTATTCCACAAATGATAGATCTATCATCAAATGAGGTTCGCATGATTGGGATCTATGGACTTGGAGGAATTGGTAAAACAACCGTTGCCAAAGTTGTTTATAATCGAATTGCCCCTCTTTTCATGATTACTAGCTTTATTGCTAATGTCAGAGAGGATTCCAAAAGTAGGGGTTTACTTCATTTACAAAAACAACTCCTTCATGAGATCTTGCCAAGCCGGAAGAACTTTATAAGCAATGTTGATGAAGGGATCCATATGATACAAGACAGGTTATGCTTTAAAAGTGTTCTTCTCATTCTTGATGATGTTGACACTTTGGACCAACTAGAAGGCTTGGCTGGTGATTGCAATTGGTTTGGTCCTGGAAGTAGAATTATTGTAACAACTAGAGATAGGCATTTGTTGGATGTGCATAAAATGGATGCATTTTATGAGGTTAAGAAATTAGATCAAATGGAAGCTATTGAGCTCTTTAGTCAACACGCATTTGAACAGAAGCATCCCAAAGAAGATTATGAAACACTTTCAAACTCTATGGTGCGTTGCGTTGATGGTCTTCCTTTAGGCCTTAAAGTTTTGGGTCGTTTCCTATTTGGCAAGACAATACTTGAATGGAAAAGTGAATTGCAAAAACTAAAACAGGAACCTAACCAAGAAATTCAAGGTGTGCTCAAGAGAAGTTATGATGAATTAGATCTCACACAAAAGGATATATTCCTAGATGTTGCTTGCTTCTTTAATGGAGAAGATAAAGATCATGTTACAAGAATCCTAGATGCTTGCAACTTCTATGCAGAGAGTGGAATACGAGTCCTCGGTGATAAATGCCTCATAACTATTTTTGACAACAAGATATTGATGCATGATTTGTTACAACAAATGGGACGATACATTGTTCGACAAGATTATCCTAACTACCCTGAAAAATGGAGCAGGTTGTGCTATCCTGACGACGTAAATCGTGTATTGATCAGAAAATCGGGAACAGAGGCAATTGAGGGCATACTCTTCGACTTGTCTATACCAAAGCGTAAGCGGATAGACATTACTACTAAATCCTTTGAGATGATGACAAGACTTAGGTTGCTCAAAATCTATTGGGCTCATGGATCTATTTCTATAAGGGAGGATAATAAAGTAAAGTTGTCCAAAGACTTTGAATTCCCCTCTTATGAGCTAAGATATCTCTACTGGCATGGATATCCTTTGGAATCTTTGCCTTCAAGTTTTTATGCTGAGGACCTCATTGAACTTGACATGTGTTACAGCAGCTTAAAACAACTTTGGGAAAGCGACGAGCCTCTTGAAAAGTTAAATACTATCAGAGTTAGTTTCTCTCAGCACCTCATGGAAATTCCAGACTTCTCAGTTAGGGCTCCAAATCTGGAAAAACTAATTCTTGATGGTTGTTCAAGTTTGCTTGAGGTTCATCCATCTATTGGAAGGCTGAAGAAGATTATTGTATTGAATCTAAAAAACTGCAAACAGCTTAGCAGTTTTCCAAGCATCACTGACATGGAAGCACTTGAAATTCTTAATTTTGCTGGCTGCTCAGAGCTCAAGAAGTTTCCGGATATTCAATGTAATATGGAACATTTATTGAAGCTTTATTTATCATCAACTGCTATAGAGGAACTTCCATCTTCAATCGGGCAGCATATCACTGGACTTGTTTTATTGGATCTGAAAAGGTGCAAAAATCTTACGAGTCTTCCCACATGTATTTTTAAGTTGAAATCCCTTGAATATCTCTTTCTGTCTGGCTGTTCAAAATTGGAGAATTTTCCAGAAATAATGGAGGACATGGAAAATTTAAAAGAGCTTCTTTTAGATGGAACATCCATAGAAGTGCTACCCTCTTCAATTGAACGTCTAAAAGGACTTGTTCTATTGAATCTGAGGAAATGCAAAAAGCTTGTGAGTCTTCCAGACAGCATGTGTAATTTGAGATCCCTTCAAACAATCATTGTCTCTGGTTGTTCACAACTAGACCAATTGCCTAAGAATGTTGGGAGCCTGCAACATCTAGTGCAGCTCCATGCTGATGGAACTGCTATAAGACAACCACCTGACTCAATTGTTCTTTTGAGAGGCCTCCGAGTGTTGATCTATCCTGGATGTAAAATATTACCATCTAGCTCATTGAGTTCACTCTTTTCATTCTGGTTGTTGCATGGAAGAGGTTCAAATGGGATTGGTTTGCGCTTGCCTTCTTTTCCATGTTTAAGCTCCTTGACAAATTTAAACCAAAGCAGTTGCAATCCAAGCAGAAACAATTTTCTAAGCATACCTACCAGCATCAGTGCACTTACTAACCTGAGAGACCTTTGGTTGGGGCAGTGCCAGAATCTTACAGAAATTCCAGAGCTTCCACCAAGTGTCCCAGATATCAATTCACGTGATTGCACATCCCTTTCATTAAGTTCATCCAGTATAAGCATGTTGCAGTGGCTGCAGTTCCTATTCTATTATTGCTTGAAGCCAGTTGAGGAGCAATTTAATGATGATAAGAGGGATGCATTACAAAGATTTCCTGATAATTTAGTGTCTTTTTCTTGTTCTGAGCCCTCTCCATCTAATTTCGCTGTGGTGAAGCAGAAATTTTTTGAAAATGTTGCATTTAGCATGATTCTTCCTGGAAGTGGAATTCCCAAGTGGATCTGGCATCGGAATATGGGATCTTTTGTAAAAGTAAAGCTACCTACGGATTGGTATGATGATGACTTTTTGGGATTTGCTGTCTGCTCTGTTCTTGAACATGTCCCTGATAGAATTGTATGCCATTTGAGTCCTGACACTCTTGATTATGGAGAATTGAGAGACTTCGGTCATGATTTCCATTGCAAAGGTAGCGATGTCAGTTCAGAGCATGTCTGGTTGGGTTATCAACCTTGTGCTCAGCTGAGGATGTTTCAAGTGAATGACCCGAATGAGTGGAGTCACATGGAGATTTCTTTTGAAGCAACCCATAGACTCAGCTCAAGAGCATCAAATATGGTGAAAGAATGTGGGGTACGTCTTATATATGCAGAAGATCTTGAAAGTATACAATGCAGCCCTCTTCTTGGGAGTTTGGGTGACTCTGGATCAAGAGTAGGAGGCAATATAGTTGAGAGAAGCAGTGACGGGGCAGGGCCCAGTGGAAGTGGAAGTGGGCACAGTTCTGTTGGCAGCAGTCAGCATTCCAGGAATGATCCCTTGCTGAAGGTCAAGCGCAAATATTTCCCAGAATGA 3846 40.48 MASANRRRASSSSTPVRPWDYEVFLSFRGEDTRRNFTGHLYAALIRKGIVTFRDDEGLSRGEEIAPSLLTAIEKSRCALVILSEHYADSRWCLEELAKIMEWRAEMGLIVYPVFYHVDPSHVRHQRGHYGEALADHERNGSGHQTQRWRAALTEVANLSGWHAENGSESEVVNDITRTILARFTRKHLHVDKNLVGMDDRLNEVIPQMIDLSSNEVRMIGIYGLGGIGKTTVAKVVYNRIAPLFMITSFIANVREDSKSRGLLHLQKQLLHEILPSRKNFISNVDEGIHMIQDRLCFKSVLLILDDVDTLDQLEGLAGDCNWFGPGSRIIVTTRDRHLLDVHKMDAFYEVKKLDQMEAIELFSQHAFEQKHPKEDYETLSNSMVRCVDGLPLGLKVLGRFLFGKTILEWKSELQKLKQEPNQEIQGVLKRSYDELDLTQKDIFLDVACFFNGEDKDHVTRILDACNFYAESGIRVLGDKCLITIFDNKILMHDLLQQMGRYIVRQDYPNYPEKWSRLCYPDDVNRVLIRKSGTEAIEGILFDLSIPKRKRIDITTKSFEMMTRLRLLKIYWAHGSISIREDNKVKLSKDFEFPSYELRYLYWHGYPLESLPSSFYAEDLIELDMCYSSLKQLWESDEPLEKLNTIRVSFSQHLMEIPDFSVRAPNLEKLILDGCSSLLEVHPSIGRLKKIIVLNLKNCKQLSSFPSITDMEALEILNFAGCSELKKFPDIQCNMEHLLKLYLSSTAIEELPSSIGQHITGLVLLDLKRCKNLTSLPTCIFKLKSLEYLFLSGCSKLENFPEIMEDMENLKELLLDGTSIEVLPSSIERLKGLVLLNLRKCKKLVSLPDSMCNLRSLQTIIVSGCSQLDQLPKNVGSLQHLVQLHADGTAIRQPPDSIVLLRGLRVLIYPGCKILPSSSLSSLFSFWLLHGRGSNGIGLRLPSFPCLSSLTNLNQSSCNPSRNNFLSIPTSISALTNLRDLWLGQCQNLTEIPELPPSVPDINSRDCTSLSLSSSSISMLQWLQFLFYYCLKPVEEQFNDDKRDALQRFPDNLVSFSCSEPSPSNFAVVKQKFFENVAFSMILPGSGIPKWIWHRNMGSFVKVKLPTDWYDDDFLGFAVCSVLEHVPDRIVCHLSPDTLDYGELRDFGHDFHCKGSDVSSEHVWLGYQPCAQLRMFQVNDPNEWSHMEISFEATHRLSSRASNMVKECGVRLIYAEDLESIQCSPLLGSLGDSGSRVGGNIVERSSDGAGPSGSGSGHSSVGSSQHSRNDPLLKVKRKYFPE* 1282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 23682045 23690594 + Vvi18g1505 Vvi18g1505 781208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1505 1281 PRINTS Disease resistance protein signature 218 233 - -
Vvi18g1505 1281 PRINTS Disease resistance protein signature 294 308 - -
Vvi18g1505 1281 PRINTS Disease resistance protein signature 387 401 - -
Vvi18g1505 1281 PRINTS Disease resistance protein signature 756 772 - -
Vvi18g1505 1281 SUPERFAMILY L domain-like 491 926 - -
Vvi18g1505 1281 Gene3D - 352 436 IPR042197 -
Vvi18g1505 1281 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 161 IPR035897 -
Vvi18g1505 1281 SMART LRR_typ_2 734 757 IPR003591 -
Vvi18g1505 1281 SMART LRR_typ_2 806 829 IPR003591 -
Vvi18g1505 1281 Gene3D Ribonuclease Inhibitor 708 845 IPR032675 -
Vvi18g1505 1281 Gene3D Ribonuclease Inhibitor 541 707 IPR032675 -
Vvi18g1505 1281 Gene3D - 187 346 IPR027417 -
Vvi18g1505 1281 PANTHER - 20 830 - -
Vvi18g1505 1281 PANTHER - 784 1004 - -
Vvi18g1505 1281 Pfam NB-ARC domain 201 435 IPR002182 GO:0043531
Vvi18g1505 1281 MobiDBLite consensus disorder prediction 1236 1281 - -
Vvi18g1505 1281 Gene3D Ribonuclease Inhibitor 846 1059 IPR032675 -
Vvi18g1505 1281 Pfam TIR domain 21 182 IPR000157 GO:0007165
Vvi18g1505 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 445 IPR027417 -
Vvi18g1505 1281 MobiDBLite consensus disorder prediction 1246 1268 - -
Vvi18g1505 1281 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 784 1004 IPR044974 GO:0006952
Vvi18g1505 1281 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 830 IPR044974 GO:0006952
Vvi18g1505 1281 ProSiteProfiles TIR domain profile. 19 183 IPR000157 GO:0007165
Vvi18g1505 1281 Pfam C-JID domain 1082 1218 IPR045344 -
Vvi18g1505 1281 SMART AAA_5 215 495 IPR003593 -
Vvi18g1505 1281 Gene3D - 18 186 IPR035897 -
Vvi18g1505 1281 SMART till_3 20 158 IPR000157 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1505 - - - vvi:100259650 2536.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003220 0 4 0 0 0 2 1 1 2 2 2 2 1 3 3 1 2 0 0 2 3 2 1 4 1 2 0 4 1 1 47