Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1514 ATGGGCTATTTTTGGAGGGTTTTGAAAATGAGCCTTATTATTAGGTTGATGTTTGTTGCAGCAACAGCAGCTGCTCAAGAAGCCAAGCCTGGCTGCCAAGAGAGCTGTGGCAACATCAGTATCCCATACCCTTTCGGCACCAGCCCCGAGTGTTACATTGCTGAAGAGTTTCTCATCACCTGCAACACTACCAATTATAGTCCTCCACAAGCATTCTTAACCAGAAGTAATATTCAAGTGCTAGAAATATTGCTCCAGGTTACGGGTTATCGTGGGCAAAATTACACCACTGGCTGCGTGTCACTATGCGATAGCGTCGATGATGTCATCAATGGCATTAACAAATACCAACAGGAGAACACACAATGTCATGACTCCATCAGTCGCCCAGGCTATGGCTGCAGTTGCTCTGACGGCTACCAAGGCAATCCTTACCTCGGCTGTCAAGATATAGATGAGTGTTCGACATTAAGCCCTTGTAATGGAACATGCCAGAATCTACCTGGTACTTTTAATTGCTCTTGTCCAAAGGGGTATGAAGGTGATGGAAGAAAAAATGGAACTGGCTGTACTCTCGTTGCTAGTCAATCCCAGAGGTTTCCCTTGATTATCATACTAGGTAAGCATATTATACTATTGACCAGTTCTTGGATATATCTGGGACTAAGGGAAAGAAAGCTGATTAAACGCAAAGAAAAATTCTTCCAGAAAAATGGTGGGCTTATGCTACAACATCTTCTTTCCAAATATGAAGGATGCACAGAAACGACTAAAATATTCACTGCCAAAGACCTTCAGAAAGCAACAGACAACTATCATGAAAGCAGAATCTTAGGCCAAGGAGGACAAGGAACAGTTTATAAGGGAATTTTACCCGACAATAGAGTTGTTGCCATTAAGAAGTCTAAGGTGACAGATCAGAGCCAAGTTGAACAATTCGTTAATGAAGTCCATATTCTCTCCCAAATCAACCATAGAAACGTGGTAAAATTATTGGGATGCTGTTTAGAAACTGAAAAAGAGAGACATTTAGTAAGGTTATTTCGTTCTGCAGTGAAAGAGGATCGTTTACTTGAAGTTCTTGATAATAAAGTTCTGAATGAGGAACATGTTCAATATTTTATGGAGGTTGCAATGTTAGCAAAAAGGTGTTTAGAAGTGAAGGGACAAGAAAGGCCTACTATGAAGGAAGTTGCAATGGAATTAGAGAGAGTACTAAAACTGATAGAGAAACACCCATGGGTAGAAGGTCATGATTGGAATTTAGAAGAGACTCAGTCCCTACTGAATGAATCTTTAAAGGCTGCGTATGGTTGTGATAGTAGCAACACAACAGGGTATGATAGTTTGAAGAGTGAAGTTAAATTGAATATTGATAGTGGTCGTTAA 1389 40.53 MGYFWRVLKMSLIIRLMFVAATAAAQEAKPGCQESCGNISIPYPFGTSPECYIAEEFLITCNTTNYSPPQAFLTRSNIQVLEILLQVTGYRGQNYTTGCVSLCDSVDDVINGINKYQQENTQCHDSISRPGYGCSCSDGYQGNPYLGCQDIDECSTLSPCNGTCQNLPGTFNCSCPKGYEGDGRKNGTGCTLVASQSQRFPLIIILGKHIILLTSSWIYLGLRERKLIKRKEKFFQKNGGLMLQHLLSKYEGCTETTKIFTAKDLQKATDNYHESRILGQGGQGTVYKGILPDNRVVAIKKSKVTDQSQVEQFVNEVHILSQINHRNVVKLLGCCLETEKERHLVRLFRSAVKEDRLLEVLDNKVLNEEHVQYFMEVAMLAKRCLEVKGQERPTMKEVAMELERVLKLIEKHPWVEGHDWNLEETQSLLNESLKAAYGCDSSNTTGYDSLKSEVKLNIDSGR* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24227997 24230642 + Vvi18g1514 Vvi18g1514 781217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1514 462 CDD EGF_CA 150 182 - -
Vvi18g1514 462 Gene3D Phosphorylase Kinase; domain 1 240 348 - -
Vvi18g1514 462 SMART egfca_6 150 191 IPR001881 GO:0005509
Vvi18g1514 462 ProSitePatterns EGF-like domain signature 2. 134 148 IPR000742 -
Vvi18g1514 462 ProSitePatterns Calcium-binding EGF-like domain signature. 150 173 IPR018097 GO:0005509
Vvi18g1514 462 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 114 339 - -
Vvi18g1514 462 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 339 433 - -
Vvi18g1514 462 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 15 84 - -
Vvi18g1514 462 ProSiteProfiles EGF-like domain profile. 150 182 IPR000742 -
Vvi18g1514 462 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 114 339 IPR045274 GO:0007166
Vvi18g1514 462 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 84 IPR045274 GO:0007166
Vvi18g1514 462 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 339 433 IPR045274 GO:0007166
Vvi18g1514 462 SUPERFAMILY EGF/Laminin 150 184 - -
Vvi18g1514 462 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 164 175 IPR000152 -
Vvi18g1514 462 ProSiteProfiles Protein kinase domain profile. 272 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1514 462 SUPERFAMILY Protein kinase-like (PK-like) 255 375 IPR011009 -
Vvi18g1514 462 Pfam Protein kinase domain 272 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1514 462 Pfam Calcium-binding EGF domain 150 186 IPR001881 GO:0005509
Vvi18g1514 462 SMART egf_5 102 149 IPR000742 -
Vvi18g1514 462 SMART egf_5 153 191 IPR000742 -
Vvi18g1514 462 Gene3D Laminin 114 153 - -
Vvi18g1514 462 Pfam Wall-associated receptor kinase galacturonan-binding 32 84 IPR025287 GO:0030247
Vvi18g1514 462 Gene3D Laminin 154 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1514 - - - vvi:100247712 436.802
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1514 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00163 . . Bda13g01455 . Bpe14g00403 . Bma02g00195 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76354 PF00069 Pkinase 2.80E-14 CL0016 Vvi PK