Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1515	ATGATTTGGCTACATGGTCTCTTAGATGAATTGGCTAAGAAGCAGGAGATGAGAATTCTACACAGTGACAGTCATAGTGCAATTTTTCTTGCCAAAAATTCGGTTTTTCATTCAAAGTCGAAGCATATACAAACAAAATACCACTTTATCCGTTACCTTATTGAAGATAAACTGGTAATACTTGAAAAGATTTATGGATCTAAGAACCCGGCAGACATGTTGACTAAGGGTGTCACTATTGAGAAGTTGAAGCTATGCACAGCTTCAATTGCTGCAACAGTTAATGGTCAAGCCAAGGAAGGTTGCCTAGACAGATGTGAGGCTGTTATCATCCCATATCCGTTTGGCACAGATGAGCACTGTTACCTCAGCCCTTATTTCTGGGTTACTAGTAACCATTCGTCCAACCCTCCTAAACTATTATTAGGCAAACCATCTCCAGAGGGAAACAATGTCCAAGTGCTGGATATTTCGCTGGAGGGTGAGTTGCTCATCTTGAACTACGTAAGCCATGACTGTTACGACAGTCTCGGTGAGGCTGACTCCCTCTATTCTTACGATTCCTATCTGAAGCCGGGCCAATTCAACATCTCGAGTACCAAAAACAATAAAACGGAGCTGCCTATGGTGTTTGATTGGGCATTGGACAAGGAGACATGTCAAGTAGATGTAAACGACCAGACCAATAACGCATGCAAGGGGAACAGCACCTGCAACAAGAGGATAACGGGTTGGGGCTATCTTTGCAACTGCTCAGAGGGTTACCAAGGGAACCCATACCTGGAGCCTGGTTGCCAAGATATAATTGAATGTGAGAATTCCATCCTCAACAAGTGTGAAAATCCAGAAACATGCATCAATACCCAAGGAAATTATACTTGTTCTTGCCCCATGTGGTACCATGGAGATGGCAAAATCGATGGTCAACGCTGTATTCCCAATCGCTTACAAATGATTCACGTTGCCATGGGTCAGAAAAATTGTAAATTTTCTAATTTATACTTAAAACTTGTAGTCGCATTTCAGTGTGCCTCGAATGTAGAACACCTAGAGAATCTAGTTTTTATTTTCTTCTATTCAAAAGTTCTAGAGCTCATATATAGTTCTCTCAAATATTGTTTAATATCTCTAATTAATATTTGTATTGGAATTGCCTTGGTCGTATTAGTGGCGGGCAGCACTTGGCTGTATTGGGCTTTGAAGAAAAGAAGGTTCGTCAAACTCAAAAAGAAATATTTTCAACAAAACGTGCCTTTACTAGTTTACGAGTTCATCAACAATGGCACCCTCTCTGACCACATACATGATGAAAATAAGGCATCTGCTATTATGTGGGAAACTCGCTTAAGGATTGCCATCCAAACCGCGGAAGCACTCTATTATTTACATTGTGTAGCATCTACGCCTATCGTTCATAGAGATGTTAAGTCTTCAAATATACTCTTAGATGAGGAGTACAATGCAAAGATGTGTGACTTTGGAGCTTCAAGATTGGTTCCATTGGATCAAAATCAGTTATCTACAGCTGTTCAGGGAACTCCTGGATACTTAGACCCTGAGTCTTTGCAGACAAACCGAAAAGCACTGTTTTTTGATAGACCCAAGGAGCAGAGAATTCTAACTATATTTTTCCTCTTTCCCCTGAAAGATGACAGCTTATTTCAGGTTCTTGAGGATTGTATAGTGAACAATGGAAACCATAAGCAGATTTTGAAAGTTGCTCAGCTTGCGCAAAGGTGCCTAAGCATAAACGGGGAGGACAGACCCACAATGAAGGAAGTAATGTTGGAACTAGAGATGATAAGAATGATTGGGGAAAATGCTGAACAGAATCCAGAAGAAAATACATACTTGCTTGGAGAATCATATGCTCACTACTATTTGGGTGGTGGTGAATCATCCATTGCTACACATAGCATGACGGGCAGTTTCTTGTTACCACTAATCAATCATTTACGCATAAAAGTAGCTTGGGGGCGTAAAGATGAAGAAGGGCAAGCCATAGCCTTGCATTACTTAAAATGTACAGTGGGACAATCCATGCATGCCCACTTCACTCATAATATTTGCATAAATCAAATATTGAAGTCTTCAAACACGCCTTGGTCTTCAACGACAAATAGTCTAAAAACTGAATTAAATAAAGCCACCAAAAATTATGATGAGAGCAATATCATTGGTGGAGGAGGTTTTGGCACAGTTTATAAAGGAACTTTAACCGATGGTAGGATTAAGTCCAAGATGGTCGAACGAATCCAAGGTAAAGACTTCATAAATGAGGTGGGTATTCTATCTCAAATAAATCATCGTCATGTGATACAACTCTTGGGTTGCTGTTTGGAAACACGAGTGCCTTTACTAGTTTACGAGCTCATTAACAATGGCACCCTCTCCGACCACATACATGATGAAAATAAGGCATCTGCTATTATGTGGGAAACTCGCTTAAGGATTGCCATCCAAACCGCGGAAGCACTCTATTATTTACATTCTGTAGCATCTTCGCCTATCGTTCATAGAGATGTTAAGTCTACGAATATACTCTTAGATGAGGAGTACAATGCAAAGATGTGTGACTTTGGAGCTTCAAGATTGGTTCCATTGGATCAAAATCAGTTATCTACAGCTGTTCAGGGAACTCCTGGATACTTGGACCCTGAGTCTTTGCAGACATACCGAGAGCAGAGAATTCTAACTATGTTTTTCCTCTTTGCCCTGAAAGATGACAGCTTATTTCAGGTTCTTGAGGATTGTATAGTGAACAATGGAAACCATATGCAGATTTTGAAAGTTGCTCAGCTTGCGAAAAGGTGCCTAAGCATAAAAGGGGAGGACAGACCCACAATGAAGGAAGTACTGTTGGAACTAGAGATGATAAGAATGATTGGGGAAAATGCTGAACAGAATCCAGAAGAAAATACATACTTGCTTGGAGAATCATATGCTCACTACCATTTGGGTGGTGGTGAATCATCCATTGCTACACATAGCATGGCGAGCAGTTTCTTAAAAATAAAGTTCTGGGAATATTTTATTGTATATCTATGGTTGTCTTAG	3057	40.2	MIWLHGLLDELAKKQEMRILHSDSHSAIFLAKNSVFHSKSKHIQTKYHFIRYLIEDKLVILEKIYGSKNPADMLTKGVTIEKLKLCTASIAATVNGQAKEGCLDRCEAVIIPYPFGTDEHCYLSPYFWVTSNHSSNPPKLLLGKPSPEGNNVQVLDISLEGELLILNYVSHDCYDSLGEADSLYSYDSYLKPGQFNISSTKNNKTELPMVFDWALDKETCQVDVNDQTNNACKGNSTCNKRITGWGYLCNCSEGYQGNPYLEPGCQDIIECENSILNKCENPETCINTQGNYTCSCPMWYHGDGKIDGQRCIPNRLQMIHVAMGQKNCKFSNLYLKLVVAFQCASNVEHLENLVFIFFYSKVLELIYSSLKYCLISLINICIGIALVVLVAGSTWLYWALKKRRFVKLKKKYFQQNVPLLVYEFINNGTLSDHIHDENKASAIMWETRLRIAIQTAEALYYLHCVASTPIVHRDVKSSNILLDEEYNAKMCDFGASRLVPLDQNQLSTAVQGTPGYLDPESLQTNRKALFFDRPKEQRILTIFFLFPLKDDSLFQVLEDCIVNNGNHKQILKVAQLAQRCLSINGEDRPTMKEVMLELEMIRMIGENAEQNPEENTYLLGESYAHYYLGGGESSIATHSMTGSFLLPLINHLRIKVAWGRKDEEGQAIALHYLKCTVGQSMHAHFTHNICINQILKSSNTPWSSTTNSLKTELNKATKNYDESNIIGGGGFGTVYKGTLTDGRIKSKMVERIQGKDFINEVGILSQINHRHVIQLLGCCLETRVPLLVYELINNGTLSDHIHDENKASAIMWETRLRIAIQTAEALYYLHSVASSPIVHRDVKSTNILLDEEYNAKMCDFGASRLVPLDQNQLSTAVQGTPGYLDPESLQTYREQRILTMFFLFALKDDSLFQVLEDCIVNNGNHMQILKVAQLAKRCLSIKGEDRPTMKEVLLELEMIRMIGENAEQNPEENTYLLGESYAHYHLGGGESSIATHSMASSFLKIKFWEYFIVYLWLS*	1019

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
18	24251669	24260656	+	Vvi18g1515	Vvi18g1515	781218

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi18g1515	1018	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	837	849	IPR008271	GO:0004672\|GO:0006468
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	705	891	-	-
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	416	618	-	-
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	894	976	-	-
Vvi18g1515	1018	ProSiteProfiles	Protein kinase domain profile.	319	601	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi18g1515	1018	Gene3D	Plasmodium vivax P25 domain	210	318	-	-
Vvi18g1515	1018	ProSiteProfiles	Protein kinase domain profile.	720	959	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi18g1515	1018	CDD	EGF_CA	267	303	-	-
Vvi18g1515	1018	SMART	egfca_6	267	312	IPR001881	GO:0005509
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	70	203	IPR045274	GO:0007166
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	207	416	IPR045274	GO:0007166
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	705	891	IPR045274	GO:0007166
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	894	976	IPR045274	GO:0007166
Vvi18g1515	1018	Gene3D	Transferase(Phosphotransferase) domain 1	792	981	-	-
Vvi18g1515	1018	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	285	296	IPR000152	-
Vvi18g1515	1018	Gene3D	Transferase(Phosphotransferase) domain 1	399	625	-	-
Vvi18g1515	1018	SUPERFAMILY	Protein kinase-like (PK-like)	399	601	IPR011009	-
Vvi18g1515	1018	SMART	egf_5	219	266	IPR000742	-
Vvi18g1515	1018	SMART	egf_5	270	312	IPR000742	-
Vvi18g1515	1018	Pfam	Protein kinase domain	403	526	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi18g1515	1018	Pfam	Protein kinase domain	720	891	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	416	618	IPR045274	GO:0007166
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	70	203	-	-
Vvi18g1515	1018	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	207	416	-	-
Vvi18g1515	1018	ProSiteProfiles	EGF-like domain profile.	223	266	IPR000742	-
Vvi18g1515	1018	ProSiteProfiles	EGF-like domain profile.	267	312	IPR000742	-
Vvi18g1515	1018	CDD	RNase_HI_RT_Ty1	1	79	-	-
Vvi18g1515	1018	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
Vvi18g1515	1018	SMART	serkin_6	720	959	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi18g1515	1018	Gene3D	Phosphorylase Kinase; domain 1	682	791	-	-
Vvi18g1515	1018	SUPERFAMILY	Protein kinase-like (PK-like)	701	959	IPR011009	-

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	76355	PF00069	Pkinase	1.90E-31	CL0016	Vvi	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1515	-		-	vvi:100264863	455.677