Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1516 ATGATGGTGCGACTTATGCTAGTAGGTTTGCTGCTATTGGCTTCAGCTGCAGCTGCTGCTGCAACAGTTGGTCAAGCCAAGGAAGGTTGCCTAGACAAATGTGGAGATGTTAGCATCCCATATCCGTTTGGTACTAATGAAGAGCAGTGTTACCTCAGCCCTTATTTCCTAGTTACTTGTAACCATTCCTCCAACCCTCCCAAACTGCTATTAGGCAAACCATCTCCAGAGGGAAACAATGTCCAAGTGCTGGATATTTCGCTGGAGGGTGAGTTGCTCATCTTGAACTACGTAAGCCATGATTGTCAAAGAGATATACAAGATGAAAACAGCCAGACCAATTACGCATGCAAGGGGAACAGCAGCTGCAATAAGAGGAAAACGGGTTGGGGCTATCTTTGCAACTGCTCAGAGGGTTACCAAGGGAACCCATACCTGGAGTCTGGTTGCCAAGATATAAATGAATGTGAGAATTCCATCCTCAACAAGTGTGAAAATCCAGAAACATGCGTCAATACCCAAGGAAATTATACTTGTTCTTGCCCCATGTGGTACCAGGGAGATGGCAAAATCGATGGTCAACGCTGTATTCCCAATCGCTTGCAAATGATTCACGCTGCCATGGGCATTGGAATTGCCTTGCTCGTATTATTGGTGAGCAGCACTTGGCTGTTTTGGGCTTTGAAGAAAAGAAGGTTCATCAAACTCAAAAAGAAATATTTTCAACAAAATGGTGGTTCAGAGCTACGACAACTCTCCAGGCAAGGATCTACCGCAAGAATTAAAATTTTTACCTTTGAAGAGCTTGAGAAAGCCACCAAAAAATATGATGAGAGCAATATCATCGGCCGAGGAGGTTTTGGCACAGTTTATAAAGGAACTTTAACCGATGTGCCTTTACTAGTCTATGAGTTCATCAACAATGGCACCCTCTCCGACCACATACATAATGAAAATAAGGCATCTGCTATCATGTGGGAAACTCGTTTAAGGATTGCCATCCAAACCGCAGAAGCCCTATATTATTTACATTCTGTGGCATCTACGCCTATCATTCATAGAGATGGAACTCCTGGATACTTAGACCCGGAGTCTATGCAGACAAACCAAGTGACCGAGAAAAGTGACAGAATTCTAACTATGTTTTTCCTCTTTGCCCTGAAAGATGACAGCTTATTTCAGGTTCTTGAGGATTGTATAGTGAACAATGGAAACCATATGCAGATTTTGAAAGTTGCTCAACTTGCGAAAAGATGCCTAAGCATAAAAGGGGAGGACAGACCCACAATGAAGGAAGTAGTGTTGGAACTAGAGATAGTGAGAATGATTGGGGAAAATGCTGAACAGAATCCAGAAGATAATGCATACTTGCTTAGAAAATCATCAGCTCACTGCTATTTGGGTGGTGCTGAATTATCCACTGCTACACATAGCATGGTGGGCAATTTCTTGTTACCAGTAAGTGATGCAAGATAA 1476 42.82 MMVRLMLVGLLLLASAAAAAATVGQAKEGCLDKCGDVSIPYPFGTNEEQCYLSPYFLVTCNHSSNPPKLLLGKPSPEGNNVQVLDISLEGELLILNYVSHDCQRDIQDENSQTNYACKGNSSCNKRKTGWGYLCNCSEGYQGNPYLESGCQDINECENSILNKCENPETCVNTQGNYTCSCPMWYQGDGKIDGQRCIPNRLQMIHAAMGIGIALLVLLVSSTWLFWALKKRRFIKLKKKYFQQNGGSELRQLSRQGSTARIKIFTFEELEKATKKYDESNIIGRGGFGTVYKGTLTDVPLLVYEFINNGTLSDHIHNENKASAIMWETRLRIAIQTAEALYYLHSVASTPIIHRDGTPGYLDPESMQTNQVTEKSDRILTMFFLFALKDDSLFQVLEDCIVNNGNHMQILKVAQLAKRCLSIKGEDRPTMKEVVLELEIVRMIGENAEQNPEDNAYLLRKSSAHCYLGGAELSTATHSMVGNFLLPVSDAR* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24275037 24277541 + Vvi18g1516 Vvi18g1516 781219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1516 491 Pfam Calcium-binding EGF domain 152 194 IPR001881 GO:0005509
Vvi18g1516 491 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 11 77 IPR045274 GO:0007166
Vvi18g1516 491 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 296 355 IPR045274 GO:0007166
Vvi18g1516 491 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 94 297 IPR045274 GO:0007166
Vvi18g1516 491 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 377 455 IPR045274 GO:0007166
Vvi18g1516 491 SUPERFAMILY Protein kinase-like (PK-like) 257 439 IPR011009 -
Vvi18g1516 491 Gene3D Transferase(Phosphotransferase) domain 1 356 464 - -
Vvi18g1516 491 Gene3D Transferase(Phosphotransferase) domain 1 308 355 - -
Vvi18g1516 491 Gene3D Laminin 155 198 - -
Vvi18g1516 491 Gene3D Phosphorylase Kinase; domain 1 250 307 - -
Vvi18g1516 491 SMART egf_5 155 197 IPR000742 -
Vvi18g1516 491 SMART egf_5 101 151 IPR000742 -
Vvi18g1516 491 Gene3D Laminin 105 154 - -
Vvi18g1516 491 ProSitePatterns Calcium-binding EGF-like domain signature. 152 179 IPR018097 GO:0005509
Vvi18g1516 491 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 296 355 - -
Vvi18g1516 491 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 377 455 - -
Vvi18g1516 491 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 11 77 - -
Vvi18g1516 491 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 94 297 - -
Vvi18g1516 491 CDD EGF_CA 152 188 - -
Vvi18g1516 491 ProSiteProfiles EGF-like domain profile. 152 197 IPR000742 -
Vvi18g1516 491 SUPERFAMILY EGF/Laminin 151 188 - -
Vvi18g1516 491 Pfam Wall-associated receptor kinase galacturonan-binding 30 92 IPR025287 GO:0030247
Vvi18g1516 491 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 170 181 IPR000152 -
Vvi18g1516 491 SMART egfca_6 152 197 IPR001881 GO:0005509
Vvi18g1516 491 ProSiteProfiles Protein kinase domain profile. 202 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1516 - - - vvi:100259679 733.021
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1516 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031882 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76356 PF13947 GUB_WAK_bind 2.40E-10 No_clan Vvi PK