Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g152 ATGTCAAGCCTTTACCAGTCTCTCTTGGATCGCACCCAAGACAATCACATGGCTCGGTCCATTGATTCTGGTAATTGGGAAGGAGTTTCAGTCAAGATTGATGATGGAAATCTTCATCTTCCACCAAATGAAGTCTCGCTCAGAGCGAAGGCCTTGACTGAAGAACGAGATGAACTAACCAAGAGTGGTCCATCAATGGGGCATGAAAGCCGCCGGCGCCTTGAAGATGTGTTGGTGTCTACTTCCATTCTATCTTCTTGGGGACACTCAAGGCGGGTGAGGGGTGCGACTCAGTCGAGGCTAATGGACCCACCTTCAAGTTTATTGAGGAAAAATGATGATGAGGAGGATGACATGGATGAAGATATGCTAGAAGATTATGCGCTAAACAAGTGCAGTGTGCTAACAATGGCTGAATGGGTGAGTCTTGTTTTAGTCGTAGCAGCTTTGTTTTGCAGTCGTTCAATACCTGCCTTAAGGAAGCAAATTCTGTGGGATCTTGCGCTGTGGAAATGGGAGGTTATGGGCTTGGTGATAATATGTGGGGGTTTGGTATCAGATTGGGGAGTTCGTCTTTCTGTGCACTTGATGGAGCGAAATTTTCTTTTGAGAAAAAGGGTTTTGTATTTTGTTTATGGGTTGAGGAGGGTTGTTCGGAATTGTCTATGGTTGGTTCTGGTTTTGATCGTTTGGGAATGTATTTTTTACCAGAAGGTTGAGATGGAAACCCACAGTAAGGCCTTGCCTTATGTAACCAAGGTTCTTGTATGCCTTCTGGTGTCTACCTTGATATGGCTTATTAAGATCATACTTGTTAAGGCTCTTGCTTCATCCTTCCACATGAACACTTTCTTTGATGAAATTCAGGAGTTGTTGGTTAAACAATATGTGATTAATAAGCTCTTGAAAGCTAAGGATGAGAAGCCTGGCAACTTCGGAGCTGACATCTTGGGGACAAAGAGTGGGGGTCCTGGTTCTAAGAAGGATAGTGAGATATCAATTGACCACCTAGATAAGCTGAGTCGGAGGAATGTGTCTGCTTGGAATATGAAGATTTTGATGGATAAGGTTCATTATAGGGGACTGTCCACTCTGGATGAGCTGATATTGCATTTAGGAATTGGGAATGAATGTCCGTTGGAGGAGAAGAATGGGTGCCGGGCCACAAAGGCAGCGGAGAAAATTCTTAAGGATATTGCTGCATCGGATCCCCAATACATCTACCTGGGTGATTTGGTGCGCTTTATGAGTGAATCTGATGCTAAGAAAACAATGGAATGCATTGGAGGAAAAGCTGAATGTGATAAAATCAGCAAGGCAACTCTTAAGAATTGGGTGGTTAGTGCAATTAAGGAAGGGAGGAAACTCGCATCATCTCTCAATGATACAAAAACAGCTGTAGATGAGCTCCACCGAATGTTGGATGTGTTTGTAGCTGTCCTCGTTGCAATAATCTGCCTTCTTATTCTCGGAGTTCCAATCACCCATTTCCTTCTCTTCATAAGTTCTCAACTTCTGCTGGTGGTGTTTGTTTTTGGGAACACATGCAAGACAACATTTGAAGCAATCATCTTCTTATTTGTGATGCACCCATATGATGTGGGTGATCGTTGTGAAATAGATGGAAACCAGGTGGTAGTTGAGGAGATGAACATATTAACCACCGTGTTTCTAAGGAGTGATAACCAAATGGTCATATACCCCAACTCTGTTCTTGCTACCAAGCCCATCTGTAATTACAAACGTAGTATGGATATAGTGGAGGCCATTGCTTTCTGTATCCACATCTCTACTCCAGTAAAAAAGATTGCCACATTCAAAGAGAAAATAAAACGGTATGTAGAAAGGAAGAGCGATCACTGGTATCCAGATCCAATGATAATCATCAAGGACGTGGAGGAACTGAACAAACTTAAAATGGCAGTGTATCTTACACACACAATGAACGGCCAGAATTCAGTGGAGATATTTACTAGGAGAAGCCTTTTGGTTGAGGAGATGATCAAAGTGTTCAGGGAGCTCGAAATTGAATACCGCATGCTGCCTCTTGATGTGAATATCAGAACCATGCCAGGTTTAGTTTCACTGGCCGCCTCCTAA 2100 43.05 MSSLYQSLLDRTQDNHMARSIDSGNWEGVSVKIDDGNLHLPPNEVSLRAKALTEERDELTKSGPSMGHESRRRLEDVLVSTSILSSWGHSRRVRGATQSRLMDPPSSLLRKNDDEEDDMDEDMLEDYALNKCSVLTMAEWVSLVLVVAALFCSRSIPALRKQILWDLALWKWEVMGLVIICGGLVSDWGVRLSVHLMERNFLLRKRVLYFVYGLRRVVRNCLWLVLVLIVWECIFYQKVEMETHSKALPYVTKVLVCLLVSTLIWLIKIILVKALASSFHMNTFFDEIQELLVKQYVINKLLKAKDEKPGNFGADILGTKSGGPGSKKDSEISIDHLDKLSRRNVSAWNMKILMDKVHYRGLSTLDELILHLGIGNECPLEEKNGCRATKAAEKILKDIAASDPQYIYLGDLVRFMSESDAKKTMECIGGKAECDKISKATLKNWVVSAIKEGRKLASSLNDTKTAVDELHRMLDVFVAVLVAIICLLILGVPITHFLLFISSQLLLVVFVFGNTCKTTFEAIIFLFVMHPYDVGDRCEIDGNQVVVEEMNILTTVFLRSDNQMVIYPNSVLATKPICNYKRSMDIVEAIAFCIHISTPVKKIATFKEKIKRYVERKSDHWYPDPMIIIKDVEELNKLKMAVYLTHTMNGQNSVEIFTRRSLLVEEMIKVFRELEIEYRMLPLDVNIRTMPGLVSLAAS* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1464151 1468615 - Vvi18g152 Vvi18g152 779855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g152 699 MobiDBLite consensus disorder prediction 95 115 - -
Vvi18g152 699 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 93 695 IPR016688 -
Vvi18g152 699 Gene3D - 531 580 IPR023408 -
Vvi18g152 699 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 93 695 - -
Vvi18g152 699 SUPERFAMILY Sm-like ribonucleoproteins 520 580 IPR010920 -
Vvi18g152 699 Pfam Mechanosensitive ion channel 474 677 IPR006685 GO:0016020|GO:0055085
Vvi18g152 699 PIRSF Memb_At2g17000 31 698 IPR016688 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g216 Vvi18g152 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g152 K22048 - vvi:104882454 1360.13