Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1520 ATGAAGAGCGAAACAGGTGAAGATTACAGGACGGAGCTCCTCCATCAGGCGCGGCCGGAGGCTAAGTCATGGCGGCTCAATCTCAGAGAGTTCCGGCTGCCGGAGCGGAGGTCGGCCGACCCGCCTTTCAGTTTGAAAGGCCTTCTTCATCACATGACTCCAAGGAAAAAGGGCAAGGTTGCAGAGTATTACAAGAAGCAGGAAAGGCTCCTTGAAGCATACAATGAGATGGAAACCATTAATTCAATGGGTTGTTTGCCTGGCCGTCTTACTGAGGATGAACTGAAGCAGCTTGAAATGAATGAGAGGATGGCCATTTATGCATCCAACATAGCTAATCTTGTGCTTTTTACTGCAAAAGTTTATGCTTCTTTTGAGAGCAGATCATTGGCGGTTATTGCATCGACTCTCGACTCCTTCTTGGATCTCTTGTCTGGGTTTATTCTCTGGTTCACTGCCCATGCCATGAGAACACCGAACCAGTATCGCTATCCCATTGGAAAGAAGCGGATGCAACCGGTGGGGATCATTGTCTTTGCATCAGTAATGGCAACTCTTGGATTACAGATACTGCTCGAGTCTGTTCGGCAACTCATTTCAGGGTCTCGTTCAAAAATGGATGGTGAGAAGGAAAAATGGATGATTGGGATTATGGTTTCTGTCACAGTAGTGAAGTTTGTGCTCATGGTCTACTGCCGGAGGTTCAAGAACGAAATAGTTAGCGCCTATGCTAAAGACCATTTCTTTGATGTCATCACAAACTCCATCGGTTTAGCAACCGCAGTCCTGGCTGTTCATTTCTACTGGTGGATTGATCCTGTTGGCGCTCTAATAATTGCAGGATATACAATTGGTACCTGGGCGAAGACCGTCATTGAGAATGTGTGGTCACTGATTGGAAGAAGTGCACCACCGGATTTCTTGGCAAAACTAACCTATCTCATATGGAACCACCATGAAGATATCAAGCATATTGACACAGTGAGAGCATATACTTTTGGTTCTCATTACTTTGTGGAGGTAGACATAGTGTTGCCAGAAGACATGTTCCTTGGCCGAGCACATAACATCGGTGAGACTCTCCAAGAGAAGTTAGAGCAACTACCTGAAGTAGAACGTGCATTTGTACATATAGATTTTGAGTTTACTCATAGGCCCGAGCACAAGACAAAGGTATGA 1179 45.63 MKSETGEDYRTELLHQARPEAKSWRLNLREFRLPERRSADPPFSLKGLLHHMTPRKKGKVAEYYKKQERLLEAYNEMETINSMGCLPGRLTEDELKQLEMNERMAIYASNIANLVLFTAKVYASFESRSLAVIASTLDSFLDLLSGFILWFTAHAMRTPNQYRYPIGKKRMQPVGIIVFASVMATLGLQILLESVRQLISGSRSKMDGEKEKWMIGIMVSVTVVKFVLMVYCRRFKNEIVSAYAKDHFFDVITNSIGLATAVLAVHFYWWIDPVGALIIAGYTIGTWAKTVIENVWSLIGRSAPPDFLAKLTYLIWNHHEDIKHIDTVRAYTFGSHYFVEVDIVLPEDMFLGRAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKTKV* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24385915 24389542 + Vvi18g1520 Vvi18g1520 781223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1520 392 Pfam Dimerisation domain of Zinc Transporter 305 379 IPR027470 -
Vvi18g1520 392 SUPERFAMILY Cation efflux protein transmembrane domain-like 102 300 IPR027469 -
Vvi18g1520 392 TIGRFAM CDF: cation diffusion facilitator family transporter 105 379 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vvi18g1520 392 Gene3D Cation efflux protein transmembrane domain 103 298 IPR027469 -
Vvi18g1520 392 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 13 392 - -
Vvi18g1520 392 PANTHER METAL TOLERANCE PROTEIN 9 13 392 - -
Vvi18g1520 392 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 302 379 IPR036837 -
Vvi18g1520 392 Gene3D Cation efflux protein, cytoplasmic domain 303 380 IPR036837 -
Vvi18g1520 392 Pfam Cation efflux family 107 298 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1520 - - - vvi:100853409 789.645
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40