Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1531 ATGACCGGATCGGACCGGAATGGTGACCGGCCGACGGTTGGACCGGTCCGACCGGCCGGTCCGGTCCGGTTTTTAAAACATTGCTTATTATGTATTGGATCACTTGATGTTCGGATGGTAGGAATTTGGGGCATGGCTGGCATAGGGAAGACTACCATTGCTAAAGTTATTTATGAGCGAATCTACACTCAATTTGAAGGTTGTTGCTTTCTTTCAAATGTTAGAGAAGAGTCATACAAACATGGTCTACCTTATTTACAAATGGAACTCCTTTCACAAATTTTAAAGGAAAGGAAACCAAATGCAGGACTTTTTAATAAAGGAATCAATTTTATGAAGGATGTGCTCCACTCTAGGAAGGTCCTTATTATCCTTGATGATGTGGATCAACGACAACAGTTGGAAGATTTAGCAGGATACAATAATTGGTTTGGTTTAGGAAGTCGAATTATCATAACAACTAGAGATCGACATTTGCTAACTTGTCAAGAAGTGGATGCAATATACGAAGTTAAGGAATTAGACAATGATGAAGCTCTTAAGCTATTTTGTCTGTATGCCTTTAGACATAGGCATGGTACAGAAGATTTTAGGCAACTATGTGGCCATGCATTAGATTATACTAGTGGCCTCCCGTTAGCCCTTAAAGTCTTGGGTTCTTCTCTATACACAAAAGGCATACATGAATGGGAGAGTGAATTGAACAAACTCAAACAATTCCCCAACAAAGAAGTTCAAAATGTGCTCAAAACAAGTTTTGAAGGGTTAGATGACAATGAACAAAATATATTTCTTGATATTGCATTCTTTTATAAAGGGCATGATAAAGATTTTGTTGGAGACATACTAGATAGTTGTGGTTTCTTCTTTGGCATTGGGATAAGAAATCTTGAAGATAAGTCACTTATAACTATTTCGGAGAATAAGTTGTGCATGCATGATTTATTACAAGAAATGGGTTGGGAAATTGTTAGACAAAAATCTGAAGTACCTGGCGAGCGTAGCAGGTTAAGAGTTCATGAGGACATCAATCATGTACTAACAACAAATACGGGGACCGAAGCAGTTGAAGGCATATTCCTTGATTTGTCTGAATCAAAAGAGTTAAACTTTAGTATTGACGCCTTTACAAAGATGAAGAGATTAAGATTGCTCAAAATTTGTAATGTGCAAATAGATAGAAGCTTAGGATATTTGTCAAAAAAAGAGTTAATTGCCTATACTCATGATGTTTGGACAGAGAGGAATTATTTGTACACTCAAAATAAATTGCACCTATATGAAGATTCCAAATTTCTATCCAACAACTTAAGAGATCTCTATTGGCATGGATACCCTTTGAAGTCCTTTCCATCAAATTTTCATCCAGAGAAGCTTGTTGAGCTAAACATGTGCTTTAGTAGACTTAAACAACTGTGGGAAGGAAAAAAGGGATTTGAGAAGTTGAAATCCATCAAACTTAGCCACTCTCAACATCTAACCAAAACACCAGACTTCTCTGGAGTGCCAAACCTTAGGAGACTAATTCTCAAAGGTTGTACAAGTTTGGTCGAGGTTCACCCATCTATTGGAGCTCTCAAGAAGCTTATTTTCCTGAATTTAGAAGGCTGCAAAAAACTCAAGAGTTTCTCAAGCAGCATCCATATGGAGTCCCTTCAAATTCTTACTCTCTCTGGCTGCTCAAAACTGAAGAAGTTTCCAGAGATCCAGGAAAACATGGAGAGTTTGATGGAGCTTTTTCTAGATGGGAGTGGTATAATAGAACTGCCTTCCTCAATTGGGTGTCTAAATGGGCTTGTTTTTTTGAATCTGAAGAATTGTAAAAAACTTGCAAGTCTTCCGCAAAGCTTTTGTGAGTTGACATCTCTTGGGACTCTTACTCTCTGTGGTTGCTCAGAGCTGAAGGAATTGCCAGATGACTTGGGGAGCCTACAATGTTTAGCAGAGCTGAATGCAGATGGAAGTGGTATACAAGAGGTTCCACCCTCTATTACTCTTTTGACAAACCTTCAAAAATTATCATTAGCAGGATGTAAGGGAGGGGATTCCAAGAGCATTGCCCAGTGA 2067 38.46 MTGSDRNGDRPTVGPVRPAGPVRFLKHCLLCIGSLDVRMVGIWGMAGIGKTTIAKVIYERIYTQFEGCCFLSNVREESYKHGLPYLQMELLSQILKERKPNAGLFNKGINFMKDVLHSRKVLIILDDVDQRQQLEDLAGYNNWFGLGSRIIITTRDRHLLTCQEVDAIYEVKELDNDEALKLFCLYAFRHRHGTEDFRQLCGHALDYTSGLPLALKVLGSSLYTKGIHEWESELNKLKQFPNKEVQNVLKTSFEGLDDNEQNIFLDIAFFYKGHDKDFVGDILDSCGFFFGIGIRNLEDKSLITISENKLCMHDLLQEMGWEIVRQKSEVPGERSRLRVHEDINHVLTTNTGTEAVEGIFLDLSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDVWTERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEIQENMESLMELFLDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSIAQ* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24591354 24594186 - Vvi18g1531 Vvi18g1531 781234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1531 688 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 679 IPR044974 GO:0006952
Vvi18g1531 688 PRINTS Disease resistance protein signature 39 54 - -
Vvi18g1531 688 PRINTS Disease resistance protein signature 115 129 - -
Vvi18g1531 688 PRINTS Disease resistance protein signature 208 222 - -
Vvi18g1531 688 PRINTS Disease resistance protein signature 547 563 - -
Vvi18g1531 688 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 36 679 - -
Vvi18g1531 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 267 IPR027417 -
Vvi18g1531 688 Gene3D Ribonuclease Inhibitor 347 548 IPR032675 -
Vvi18g1531 688 Pfam NB-ARC domain 29 250 IPR002182 GO:0043531
Vvi18g1531 688 Pfam Leucine Rich Repeat 458 477 IPR011713 -
Vvi18g1531 688 Gene3D - 173 257 IPR042197 -
Vvi18g1531 688 SUPERFAMILY L domain-like 414 679 - -
Vvi18g1531 688 SUPERFAMILY Winged helix DNA-binding domain 244 347 IPR036390 -
Vvi18g1531 688 Gene3D - 21 168 IPR027417 -
Vvi18g1531 688 Gene3D Ribonuclease Inhibitor 549 684 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1531 - - - vvi:100261322 1164.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013419 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 1 0 0 1 0 1 0 4 2 1 1 0 1 5 24