Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1536 ATGGGTGGAGTTGGGAAGACCACACTTGCCCTGATGGTGTACAACGATGAGGAAACAGCAAAAAAATTCAGTCTCAAAGCTTGGGTTTGTGTATCAAATCAGTACGATATGGTGAGAATAACAAAGACAATTCTCGAGGCTGTCACTTCCCACAGCAATTGTTGGCTGGTGTTTGAGAAACATGCTTTTCAGAATAGGAGTATTAACCTCCATCCAAGTTTAGTATTGATTGGCAAGAAAATTGTAGAAAAGTGTGCGGGCTTGCCTATTATCCCTGCGTTGAGATTGAGCTACAATCATCTCCCTTCACATTTGAAGAGGTGTTTTGCTTATTGTGCAATATTCCCAAAGAACTACGAATTTATGGTAAAAGAGTTGATTCTCTTATGGATGGCTGAAGGTTTGATTCAATGTTCTCAAGACATTAATAAGCAAGAAATGGAAGATTTAGGTCATGATTATTTTCGTGAAATGCTGTCAATGTCATTTTTTCAACCATCAAATAGAAATATATCACGATTCGTGATGCATGACTTCATTCATGATCTAGCTCAATTTGTAGCCGGAGAAATATGCTTTCATTTAGAGGATAGGTTGGGGATTGACTGCTCTATTTCTGAAAAGATTCGTTTTTCATCATTCATTCGTTGCTACTTTGATGTCTTCAACAAGTTTGAATTCTTTCATAAGGTTGGACATTTGCACACCTTTATAGCATTACCAGTTTGTTCATCACCGTTTTTGCCCCATTATTTAAGCAATAAGATGCTTCATGAATTGGTGCCAAAACTAGTAACCCTAAGGGTAATCTTACTAGGTTTTGGTAAACTCAAAAATGCAAAGAATGCTAATCTACATCTCAAACACATACTTGAATGGTTGACAGTGAAATGGAGTGCCAAGCTTGATGATTCGCGAAACAAAATGCATGAAATGGATGTCCTTAACTCTCTACAACCCCATTTGAATCTAAAAAAACTTAGCATTATGGAATATGGTGGACTAAAATTACCATGTTGGATAGGGGATTCCTCATTTTGTAAAATGGTGGATGTAACGCTCATTAATTGTAGAAAATGCATATCGCTACCATGCCTTGGACAATTACCATTGCTCAAAAACTTACGGATTGAAGGAATGGAAGAAGTGAAAAAAGTGGGTGTTGAGTTCCTTGGGGGGCCTTCTCTTTCCATCAAAGCTTTCCCATCCTTGGAGTCTTTATCTTTTGTGAATATGCCAAAGTGGGTGAATTGGGAGCACAGGTTCAACAGATTACATCAAGGGCTCATGGCCTTCTTACCAGCACTTGAAGTCCTGAGAATTTCAGAATGTGGTGAACTGACATATTTGTCGGATGGATCAAAAAACTTATTGGAGATTATGGATTGTCCACAACTTGTATCCTTGGAAGATGATGAAGAACAAGGGCTGCCTCACAGTCTTCAGTATCTGGAAATAGGGAAGTGTGATAACCTGGAGAAGCTTCCTAATGGATTGCAGAACCTAACATCTCTTGAAGAGTTAAGCATCTGGGCTTGTCCAAAGCTGGTATCATTTCCAAAAATAGATTTCCTCTCAATGCTTAGGCGGCTTATCATCAGAGATTGTGAAGACCTAAAGTCTCTTCCTGATGGGATGATGAGGAATTGTAACAAGAATAGCAGCTTGTGTCTCCTAGAATATTTAGAGATCAGCTTCTGTCCATCTCTCCGATGTTTTCCAGAAGGAGAGTTACCAACTACTCTTAAGGAACTGCATATATGTTACTGCAAAAACCTCGAGTCTCTACCAGATGGAGTGATGAAACATGATTCCAGCCCCCAGCACAATACTAGTGGCCTTCAAGTCTTGCAAATCTGGAGATGTTCATCTCTCAAGTCATTCCCGAGAGGTTGCTTCCCTCCCACCCTGAAGCTACTTCAGATTTGGAGTTGCAGCCAACTGGAGTTGATGATAGAGAAGATGTTTCACGATGATAATTCACTTGAATGTTTGGACGTCAATGTGAATTCAAACTTAAAAAGCTTACCAGACTGCCTCTACAACCTCAGAAGACTTCAGATCAAAAGATGCATGAATCTCAAGTCCCTGCCGCATCAAATGCGAAACCTGACTTCTCTTATGTCTCTTGAGATAGCTGACTGTGGGAATATCCAGACTTCCCTATCTAAGTGGGGCCTTAGCAGACTCACCTCTCTTAAATCATTCTCCATTGCTGGCATATTTCCTGAAGTGGTCTCCTTTTCTAATGATCCGGATCCGTTTCTTCTTCCCTCAACTCTCACCTATCTTTCCATTGAAAGATTCAAAAATCTTGAATCCCTTACCTCCCTGGCTCTCCACACACTCACCTCCCTTCAGCATCTATGGATTTCAGGGTGTCCTAAGCTGCAGTCATTTTTGTCAAGAGAAGGACTTTCTGACACAGTTTCACAGCTATATATCAGAGATTGTCCACTCCTAAGTCAAAGGTGCATAAAGGAGAAAGGAGAAGATTGGCCCATGATTTCCCACATCCCATATGTTGAAATAAACCGCAAGTTCATCTTTGAGCAATAA 2559 40.21 MGGVGKTTLALMVYNDEETAKKFSLKAWVCVSNQYDMVRITKTILEAVTSHSNCWLVFEKHAFQNRSINLHPSLVLIGKKIVEKCAGLPIIPALRLSYNHLPSHLKRCFAYCAIFPKNYEFMVKELILLWMAEGLIQCSQDINKQEMEDLGHDYFREMLSMSFFQPSNRNISRFVMHDFIHDLAQFVAGEICFHLEDRLGIDCSISEKIRFSSFIRCYFDVFNKFEFFHKVGHLHTFIALPVCSSPFLPHYLSNKMLHELVPKLVTLRVILLGFGKLKNAKNANLHLKHILEWLTVKWSAKLDDSRNKMHEMDVLNSLQPHLNLKKLSIMEYGGLKLPCWIGDSSFCKMVDVTLINCRKCISLPCLGQLPLLKNLRIEGMEEVKKVGVEFLGGPSLSIKAFPSLESLSFVNMPKWVNWEHRFNRLHQGLMAFLPALEVLRISECGELTYLSDGSKNLLEIMDCPQLVSLEDDEEQGLPHSLQYLEIGKCDNLEKLPNGLQNLTSLEELSIWACPKLVSFPKIDFLSMLRRLIIRDCEDLKSLPDGMMRNCNKNSSLCLLEYLEISFCPSLRCFPEGELPTTLKELHICYCKNLESLPDGVMKHDSSPQHNTSGLQVLQIWRCSSLKSFPRGCFPPTLKLLQIWSCSQLELMIEKMFHDDNSLECLDVNVNSNLKSLPDCLYNLRRLQIKRCMNLKSLPHQMRNLTSLMSLEIADCGNIQTSLSKWGLSRLTSLKSFSIAGIFPEVVSFSNDPDPFLLPSTLTYLSIERFKNLESLTSLALHTLTSLQHLWISGCPKLQSFLSREGLSDTVSQLYIRDCPLLSQRCIKEKGEDWPMISHIPYVEINRKFIFEQ* 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24653599 24658199 + Vvi18g1536 Vvi18g1536 781239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1536 852 Pfam NB-ARC domain 1 50 IPR002182 GO:0043531
Vvi18g1536 852 Gene3D Ribonuclease Inhibitor 250 458 IPR032675 -
Vvi18g1536 852 Gene3D Ribonuclease Inhibitor 660 829 IPR032675 -
Vvi18g1536 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 112 IPR027417 -
Vvi18g1536 852 SUPERFAMILY L domain-like 468 834 - -
Vvi18g1536 852 SUPERFAMILY L domain-like 175 467 - -
Vvi18g1536 852 Gene3D - 1 80 IPR027417 -
Vvi18g1536 852 PANTHER - 255 522 - -
Vvi18g1536 852 PANTHER - 50 90 - -
Vvi18g1536 852 PANTHER - 1 46 - -
Vvi18g1536 852 PANTHER - 90 271 - -
Vvi18g1536 852 Gene3D - 92 186 IPR036388 -
Vvi18g1536 852 Gene3D Ribonuclease Inhibitor 459 620 IPR032675 -
Vvi18g1536 852 PANTHER DISEASE RESISTANCE PROTEIN RP 1 46 IPR044974 GO:0006952
Vvi18g1536 852 PANTHER DISEASE RESISTANCE PROTEIN RP 255 522 IPR044974 GO:0006952
Vvi18g1536 852 PANTHER DISEASE RESISTANCE PROTEIN RP 90 271 IPR044974 GO:0006952
Vvi18g1536 852 PANTHER DISEASE RESISTANCE PROTEIN RP 50 90 IPR044974 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1536 - - - vri:117906052 857.055
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1536 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000391 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 83 83