Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1537 ATGGCTACCGGAGTAGAGTGGAAGGAATCGGAGAAGGTGGCCGGAATCGCCCTGGAGTTTCCGGCCAATGACAATGCAACGTCGTCTCCTTCTTCGCCTCACAAGCTTCCTCGGCGACTTCGCCGGCGTCTCCTCGAGTCGAAGAGCCCTTCTACGGTGGAAGATATCGAAGCTAAGCTCAAAGAGGCCGATCTCCGCCGCCAGCAATTCTATGAAGGTTTATCAAACAAGGCGCGACCCAAAATGAGAAGTCACTCATGGTCCCCTTTGCAAGAGGCAGACCTTGGTCAGAGGCTTGAAGCAAAACTTAAGGCTGCTGAGCAAAAAAGGTTGAGCATTCTAGCTAATGCTCAAATGCGGTTGGCAAAGTTGGATGAGTTGCGACAAGCAGCTAAAACTGGACTAGAAATGCGTTTTGTGAAGGAACGTGATGAGCTTGGTATGAAGGTTGAATCAAGAGTACAGCAAGCGGAGACAAACAGGATGCTTCTCCTCAAAGCTTATAGGCAACGTAGGGCTGCAAAGGAAGAGCGCGCTGCTCAGTCATTGATGAGGAGGATGATTCAGGACAGCAAGTATAAGGAGTGTGTGCGTGCTGCAATTCACCAAAAACGTGCTGCTGCTGAGAGGAAAAGGTTGGGATTGTTGGAAGCAGAGAAGACAAGGGCACATGCAAGGGTATTGCAAGTGCGGAAGGTAGTCAAGTTTGTTTATAGTCAGCGTGAAATTGAAAGAAGAAGAATGAAGGATCAACTAGAAGATCGGCTCCAAAGGGCTAAAAGACAAAGAGAAGAACACTTGAGGCAGAAAGGGAGTTTGCATAGTTCTGTTTGTGCCAATTCAAAAGTGATAAATGAGCAAGGGGAGCTCCTTGCAAGAAAGTTAGCAAGGTGCTGGAGACGATTTGTGAGATTGAGGAGAACAACTTTTTCATTGACAAAATCTTACAATGACTTAGAAATCTCTCTAGAGTCTGTTAGGTCGATGCCATTTGAGAAGCTTGCCCTCCAGATGGAGTCAGCCAACACTATCCAAACTGTGAAAGCTTTACTTGACCGTTTTGAGAGTCGCCTCATGATCTCACATGCAGCTACCCCTACCAGGAGTCTATCTAATTTAGAAAACATTGATAACCTTCTTATGCGTGTCACTTCTCCAAAGCGAAGGGGCAATACCAATAACAGAGGGGTAAACAGAGGAGAGCATGAAATTGCTCTGGCCGAGTCAGCAGCAACATTTGTCCAAGAGTTTGAGTTGCTGATCAAGATTATATCAGATGGCCCTACTCACACTACTCAAGGGGGAACAAACTCCTCAGCTCCTAATCAACTGACCTTCAGATCCCAGCTGGAAGCTTTTGATAGATCATGGTGCTCTTACCTGTATTCCTTTGTGGCATGGAAGGTTAAGGATGCAAAGCTGTTAGAGGAGGATTTGGTGAAAGCTGCTAGCCAACTGGAGGTTTCCATGATGCAAAATTGCAAGCTGACTCCAGAAGGGGATAATGGCAGTCTTTCTCATGATATGAAGGCCATACAAAAGCAGGTGACAGAGGATCACAAACTTTTAAGGACTAAAGTCCAGAATCTGAGTGGTAATGCTGGGCTTGAACAGATGGAATTTGCTCTCTCTGATGCATGGTCTAGATTCTTTGAAGCCAAGGAGACTGGAAGTTCATTAGTATCATCAGTTGCTCATATTTCTTCTCCAATTCTGCCTGGTTCATCAAATAACTCTTCAATTTTGGGTGAAATGGGGAGTATTTCTGAAAGCATGGAGAGGTCAGACCATATTGTGTATCCCTTAAGTGACGTGGACGGCTATGGTGCAATGTCAGTCACTGAGAATGAACTACTTGTAAATGAGATTGTTCATGAGCATGGCCATGGTTTTGCAGATAGCTTTGATGTTAGTGACAATGATCAGAGTAGTATAAAGGAAAAAGTTAGGGAAACAATGGAAAAGGCATTCTGGGATGGGATCATGGACTCCTTGAAACAGGATGAGCCTGACTACAGTTGGGTTCTTAAACTCATGAAGGAAGTCAAGGATGAACTATGCGAGATGTCTCCTCAAAGTTGGAGACAGGAGATTGTGGAGACCATTGATATTGATATTCTCCCACAGGTGCTGAGAGCAGAAATATTAGACATTGATTTCCTTGGAAAGATCCTAGAGTTTGCCTTGGTCACTTTGCAGAAACTTTCTGCTCCTGCTAATGATGACAAGATGAAGGCTGCTCACTACAAGTTATTAAAAAGACTCAGAGATGCTTCACAGGCTGGAGATAAATCAAATGCTTCATTTGCCCTCTTGATGGTTGAGGGTTTGCGGTTTGTTCTAGAGCAGATTCAGACTCTTAGGCAAGAAATTAGCAGAGCACGCATAAGAATGATGGAACCACTCATAAAGGGGCCTGCTGGTTTGGAATACCTGAAGAAAGCTTTTGCCAACCGGTATGGACCACCCACTGATGCCCATACTTCTCTACCATTGACCATGCAATGGCTTTCATCAGTGCATTCAAGTGCAGAGCAGGAGTGGGATGAATACAAGGATTCTGTATCATCTTTGACAGTGAACAATGAAAGATTATATCAGGGCCTTCCACCCACCACTCTCCGAACTGGTGGCAGTATTCCAATGGCATCCAGATTAGGCTCTCCAAGTTCTAAAGGTGATGAACAACCGGAATGCAAGGGAGAAAGGGTTGATTTGTTAGTGCGGGTGGGTCTGTTAAAGCTGGTGAATGAGATTGGGGGCCTGATGCTGGAAACTCTGCCTGAAACTCTTAAGCTTAACCTCTCCAGGCTAAGGGGTGTCCAGTCTCAATTTCAGAAGATCATTGTGATTGCTACCAGCGTGTTGGTTCTCCGGCAAACTCTTCTGAGCGAGAACATGGTGACTACTGCGGCAGACATGGAGAACATAGTATCCAGCTGCATTAAGCAGCTCTCCAAGCTATTGGACACTGTTGAAGATGTGGGCATATCCGAAATTGTTGGAACGATCAGTAGCTTCCCAGAAGGTAACAACCATACCCTGAACCCTGAGAAGCTCCAAGCCAGAAAGGAGGTGATGGCAAACATGCTGGGAAAGAGCTTACAAGCTGGAGACGCCATATTCACCCGGGTATCCCACACTGTCTACTTGGCCGCAAGAGGGATTGTGCTGGGTGGGAACGGACTTAAGGGTAGGCAATTGGCAGAAGCAGCACTCCGACGCATAGGAGCTTCTCTTCTCACAGAAAATGTGGTGGAGGCTGCAGAAGTGTTGATCGTGGTGACCACCGTTTCAAGCAGTGTTCATGGAGCATGGTATGAAGAATTGGTTAAGAACCTGTGA 3345 45.89 MATGVEWKESEKVAGIALEFPANDNATSSPSSPHKLPRRLRRRLLESKSPSTVEDIEAKLKEADLRRQQFYEGLSNKARPKMRSHSWSPLQEADLGQRLEAKLKAAEQKRLSILANAQMRLAKLDELRQAAKTGLEMRFVKERDELGMKVESRVQQAETNRMLLLKAYRQRRAAKEERAAQSLMRRMIQDSKYKECVRAAIHQKRAAAERKRLGLLEAEKTRAHARVLQVRKVVKFVYSQREIERRRMKDQLEDRLQRAKRQREEHLRQKGSLHSSVCANSKVINEQGELLARKLARCWRRFVRLRRTTFSLTKSYNDLEISLESVRSMPFEKLALQMESANTIQTVKALLDRFESRLMISHAATPTRSLSNLENIDNLLMRVTSPKRRGNTNNRGVNRGEHEIALAESAATFVQEFELLIKIISDGPTHTTQGGTNSSAPNQLTFRSQLEAFDRSWCSYLYSFVAWKVKDAKLLEEDLVKAASQLEVSMMQNCKLTPEGDNGSLSHDMKAIQKQVTEDHKLLRTKVQNLSGNAGLEQMEFALSDAWSRFFEAKETGSSLVSSVAHISSPILPGSSNNSSILGEMGSISESMERSDHIVYPLSDVDGYGAMSVTENELLVNEIVHEHGHGFADSFDVSDNDQSSIKEKVRETMEKAFWDGIMDSLKQDEPDYSWVLKLMKEVKDELCEMSPQSWRQEIVETIDIDILPQVLRAEILDIDFLGKILEFALVTLQKLSAPANDDKMKAAHYKLLKRLRDASQAGDKSNASFALLMVEGLRFVLEQIQTLRQEISRARIRMMEPLIKGPAGLEYLKKAFANRYGPPTDAHTSLPLTMQWLSSVHSSAEQEWDEYKDSVSSLTVNNERLYQGLPPTTLRTGGSIPMASRLGSPSSKGDEQPECKGERVDLLVRVGLLKLVNEIGGLMLETLPETLKLNLSRLRGVQSQFQKIIVIATSVLVLRQTLLSENMVTTAADMENIVSSCIKQLSKLLDTVEDVGISEIVGTISSFPEGNNHTLNPEKLQARKEVMANMLGKSLQAGDAIFTRVSHTVYLAARGIVLGGNGLKGRQLAEAALRRIGASLLTENVVEAAEVLIVVTTVSSSVHGAWYEELVKNL* 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24686321 24706873 + Vvi18g1537 Vvi18g1537 781240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1537 1114 Coils Coil 777 797 - -
Vvi18g1537 1114 MobiDBLite consensus disorder prediction 869 899 - -
Vvi18g1537 1114 PANTHER - 397 1114 - -
Vvi18g1537 1114 PANTHER - 8 387 - -
Vvi18g1537 1114 MobiDBLite consensus disorder prediction 19 39 - -
Vvi18g1537 1114 PANTHER TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 397 1114 IPR008862 -
Vvi18g1537 1114 PANTHER TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 8 387 IPR008862 -
Vvi18g1537 1114 Pfam T-complex protein 11 619 1111 IPR008862 -
Vvi18g1537 1114 MobiDBLite consensus disorder prediction 869 891 - -
Vvi18g1537 1114 Coils Coil 242 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1537 - - - vvi:100252816 2070.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .