Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1538 ATGGAGGAGGGCCCACCAGCGAATGACGTCTGCAGTGTATGCCATGGAGGCTTCAACATCCCCTTTCAAGCCAATTGCTCTCATTGGTTCTGCGGGAATTGTATTCTACTTGTTTGGCAGCATGGATCAGCACTTCAGCCATGCAAATGCCCTCTATGCCGTCGTCAGATTACTTTGCTGGTTCCTGCTGGGGCTTCACAACGGCAGTGTAATGATCCTGAAGTTTCTGCGATAGTAGGAAGGGTAGAACGATATAACCGTTTATTTGGTAGATGTGACAGTAGTCTCTTTCAGAGAATGCGAGATCTTCCTTTTCTCCTTCGGAGGTTGTTGCGAGAATTGATGGATCCTCAAAGATCTCTTCCTCTTCTCATCAGGGCACGAGTCTATTTTGCAATGTTAACAAGTATTATCTACATAGTCAGCCCTGTAGACATTATTCCAGAAGGGGTTGTGGGAATCCTAGGTCTTTTGGATGATTTCATTATAGCATTCATCTGTTTCCTCCATATTGCTGCCATTTATCGGTCAGTACTTGTTCATCGTCATGGAGGTCCTTAA 561 45.1 MEEGPPANDVCSVCHGGFNIPFQANCSHWFCGNCILLVWQHGSALQPCKCPLCRRQITLLVPAGASQRQCNDPEVSAIVGRVERYNRLFGRCDSSLFQRMRDLPFLLRRLLRELMDPQRSLPLLIRARVYFAMLTSIIYIVSPVDIIPEGVVGILGLLDDFIIAFICFLHIAAIYRSVLVHRHGGP* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24707444 24716860 - Vvi18g1538 Vvi18g1538 781241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1538 186 Pfam Zinc finger, C3HC4 type (RING finger) 11 53 IPR018957 GO:0046872
Vvi18g1538 186 Pfam Protein of unknown function (DUF1232) 132 165 IPR010652 -
Vvi18g1538 186 SMART ring_2 11 53 IPR001841 -
Vvi18g1538 186 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Vvi18g1538 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 100 IPR013083 -
Vvi18g1538 186 PANTHER BNAC07G13660D PROTEIN 6 185 - -
Vvi18g1538 186 PANTHER UNCHARACTERIZED 6 185 IPR038896 GO:0061630
Vvi18g1538 186 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
Vvi18g1538 186 SUPERFAMILY RING/U-box 8 60 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1538 K15707 - vvi:100247708 372.859