Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g154 ATGCGTCCGGGTTTTGATGATGAACTTTGGGCACACTTCTCTCGACTTCCGACTAGGTATGCGCTTGATGTAAATGTAGAGAGGGCCGAAGATGTTCTTACACACAAGAGACTACTACAATTGGCACATGATCCAGCCACTAGACCAGCACTTGAAGTCCGCCTTGTGCAGGTCCATCCCATTTCTGGTGGAATTCATGGTGATTCTGATCCTTCAAACCCTTTAAAAAAGGTGGATGCTCAAAGTCATTATCACACCAGTCAGAGGAGCACTCATCCACCATCTACCTTTGGATTGTTGCCTAATATGAAAGTTTTGGTTGAAGCCAAAAATTCACATGTTCAAGATGGAGAAGGTGATGTGGATGCCAATCTACGCTTTTGGAGGCTGATGCATGAAGTTATAATTTCAACAAATGACAAGCCCAAGCTCCTCAGTCAGTTGACCTCATTACTTTCTGATATTGGATTGAACATTCAAGAAGCACATGCTTTTTCCACGACAGATGGCTACTCCTTGGATGTTTTTGTTGTTGAGGGCTGGGCACATGAGGAAACTGAGCAGCTTAGAAATGTACTGCTAAAGGAAATTCAAATGATTGAGAAGCAACCTTGGTCAGAATTCCAGCTCATATCTCCTGGGAGGGAGCAAGGACACCCTGAAAAACAGCTTATCCCTAGTCACATAAACTTAACCATTGATGGGGCTGATGTCTGGGAAATTGATGCCACGCTGTTGAAATTTGAAAACAAAATTGCATCTGGATCGTATGGTGATTTGTATAAAGGTACTTTTTGTAGCCAGGATGTGGCTATTAAAGTTCTCAAGACTCAGCATTTAAATGAAGATATGTGGAGGGAATTTTCTCAAGAAGTCTATATTATGAGAAAAGTTCGGCACAAGAATATTGTGCAATTTATTGGTGCATGTACCAGACCTCCAAGCCTGTGCATTGTGACTGAGTTTATGTTTGGTGGAAGTGTCTATGACTTTCTGCATAAGCAAAAGGGCAGTTTTAAGCTTCCATCCTTGCTCAAAGTAGCAATTGATGTGTCCAAGGGAATGAATTACTTGCATCAAAATGACATAATCCACAGGGACCTGAAAGCTGCCAATATTCTGATGGATGAAAACAAAGTTGTTAAGGTTGCTGATTTTGGTGTTGCTAGAGTACAAGCTCAATCTGGAGTCATGACTGCTGAAACTGGAACTTATCGTTGGATGGCTCCAGAGGTCATTGAACATAAACCATATGATCACAAGGCTGATGTTTTCAGCTTCGGAATTGTATTGTGGGAGCTTCTAACAGGAAAGCTTCCTTATGAGCACTTAACCCCATTACAAGCTGCAGTTGGTGTGGTCCAGAAGGGTCTAAGGCCTACTATTCCGAGTCACACTTATCCATCACTTGTAAAATTGATCAAGAGATGCTGGCACCAGGAACCATCTTTAAGACCTGAATTCACTGAAATTATGGAGATATTGCAGCAGATAGCTAGCAAGGTTGTGGAAAAAAAGAGAGAGATCTTAGAGGGAAGAGGGAAAAGGCAGAAGGAGAAATCTATCTAG 1569 41.94 MRPGFDDELWAHFSRLPTRYALDVNVERAEDVLTHKRLLQLAHDPATRPALEVRLVQVHPISGGIHGDSDPSNPLKKVDAQSHYHTSQRSTHPPSTFGLLPNMKVLVEAKNSHVQDGEGDVDANLRFWRLMHEVIISTNDKPKLLSQLTSLLSDIGLNIQEAHAFSTTDGYSLDVFVVEGWAHEETEQLRNVLLKEIQMIEKQPWSEFQLISPGREQGHPEKQLIPSHINLTIDGADVWEIDATLLKFENKIASGSYGDLYKGTFCSQDVAIKVLKTQHLNEDMWREFSQEVYIMRKVRHKNIVQFIGACTRPPSLCIVTEFMFGGSVYDFLHKQKGSFKLPSLLKVAIDVSKGMNYLHQNDIIHRDLKAANILMDENKVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEHLTPLQAAVGVVQKGLRPTIPSHTYPSLVKLIKRCWHQEPSLRPEFTEIMEILQQIASKVVEKKREILEGRGKRQKEKSI* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1477097 1491666 - Vvi18g154 Vvi18g154 779857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g154 522 SUPERFAMILY ACT-like 132 200 IPR045865 -
Vvi18g154 522 Gene3D Transferase(Phosphotransferase) domain 1 325 522 - -
Vvi18g154 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Vvi18g154 522 ProSiteProfiles ACT domain profile. 133 208 IPR002912 -
Vvi18g154 522 SMART serkin_6 246 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g154 522 Coils Coil 183 203 - -
Vvi18g154 522 PANTHER - 16 504 - -
Vvi18g154 522 ProSiteProfiles Protein kinase domain profile. 246 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g154 522 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 16 504 - -
Vvi18g154 522 MobiDBLite consensus disorder prediction 75 95 - -
Vvi18g154 522 SUPERFAMILY Protein kinase-like (PK-like) 227 495 IPR011009 -
Vvi18g154 522 CDD STKc_MAP3K-like 252 495 - -
Vvi18g154 522 PRINTS Tyrosine kinase catalytic domain signature 320 333 IPR001245 GO:0004672|GO:0006468
Vvi18g154 522 PRINTS Tyrosine kinase catalytic domain signature 357 375 IPR001245 GO:0004672|GO:0006468
Vvi18g154 522 PRINTS Tyrosine kinase catalytic domain signature 403 413 IPR001245 GO:0004672|GO:0006468
Vvi18g154 522 PRINTS Tyrosine kinase catalytic domain signature 422 444 IPR001245 GO:0004672|GO:0006468
Vvi18g154 522 PRINTS Tyrosine kinase catalytic domain signature 466 488 IPR001245 GO:0004672|GO:0006468
Vvi18g154 522 Gene3D Phosphorylase Kinase; domain 1 236 323 - -
Vvi18g154 522 MobiDBLite consensus disorder prediction 62 95 - -
Vvi18g154 522 Pfam Protein tyrosine and serine/threonine kinase 246 495 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g221 Vvi18g154 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76357 PF07714 PK_Tyr_Ser-Thr 1.50E-74 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g154 - - vvi:100253953 1058.13