Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g154 | ATGCGTCCGGGTTTTGATGATGAACTTTGGGCACACTTCTCTCGACTTCCGACTAGGTATGCGCTTGATGTAAATGTAGAGAGGGCCGAAGATGTTCTTACACACAAGAGACTACTACAATTGGCACATGATCCAGCCACTAGACCAGCACTTGAAGTCCGCCTTGTGCAGGTCCATCCCATTTCTGGTGGAATTCATGGTGATTCTGATCCTTCAAACCCTTTAAAAAAGGTGGATGCTCAAAGTCATTATCACACCAGTCAGAGGAGCACTCATCCACCATCTACCTTTGGATTGTTGCCTAATATGAAAGTTTTGGTTGAAGCCAAAAATTCACATGTTCAAGATGGAGAAGGTGATGTGGATGCCAATCTACGCTTTTGGAGGCTGATGCATGAAGTTATAATTTCAACAAATGACAAGCCCAAGCTCCTCAGTCAGTTGACCTCATTACTTTCTGATATTGGATTGAACATTCAAGAAGCACATGCTTTTTCCACGACAGATGGCTACTCCTTGGATGTTTTTGTTGTTGAGGGCTGGGCACATGAGGAAACTGAGCAGCTTAGAAATGTACTGCTAAAGGAAATTCAAATGATTGAGAAGCAACCTTGGTCAGAATTCCAGCTCATATCTCCTGGGAGGGAGCAAGGACACCCTGAAAAACAGCTTATCCCTAGTCACATAAACTTAACCATTGATGGGGCTGATGTCTGGGAAATTGATGCCACGCTGTTGAAATTTGAAAACAAAATTGCATCTGGATCGTATGGTGATTTGTATAAAGGTACTTTTTGTAGCCAGGATGTGGCTATTAAAGTTCTCAAGACTCAGCATTTAAATGAAGATATGTGGAGGGAATTTTCTCAAGAAGTCTATATTATGAGAAAAGTTCGGCACAAGAATATTGTGCAATTTATTGGTGCATGTACCAGACCTCCAAGCCTGTGCATTGTGACTGAGTTTATGTTTGGTGGAAGTGTCTATGACTTTCTGCATAAGCAAAAGGGCAGTTTTAAGCTTCCATCCTTGCTCAAAGTAGCAATTGATGTGTCCAAGGGAATGAATTACTTGCATCAAAATGACATAATCCACAGGGACCTGAAAGCTGCCAATATTCTGATGGATGAAAACAAAGTTGTTAAGGTTGCTGATTTTGGTGTTGCTAGAGTACAAGCTCAATCTGGAGTCATGACTGCTGAAACTGGAACTTATCGTTGGATGGCTCCAGAGGTCATTGAACATAAACCATATGATCACAAGGCTGATGTTTTCAGCTTCGGAATTGTATTGTGGGAGCTTCTAACAGGAAAGCTTCCTTATGAGCACTTAACCCCATTACAAGCTGCAGTTGGTGTGGTCCAGAAGGGTCTAAGGCCTACTATTCCGAGTCACACTTATCCATCACTTGTAAAATTGATCAAGAGATGCTGGCACCAGGAACCATCTTTAAGACCTGAATTCACTGAAATTATGGAGATATTGCAGCAGATAGCTAGCAAGGTTGTGGAAAAAAAGAGAGAGATCTTAGAGGGAAGAGGGAAAAGGCAGAAGGAGAAATCTATCTAG | 1569 | 41.94 | MRPGFDDELWAHFSRLPTRYALDVNVERAEDVLTHKRLLQLAHDPATRPALEVRLVQVHPISGGIHGDSDPSNPLKKVDAQSHYHTSQRSTHPPSTFGLLPNMKVLVEAKNSHVQDGEGDVDANLRFWRLMHEVIISTNDKPKLLSQLTSLLSDIGLNIQEAHAFSTTDGYSLDVFVVEGWAHEETEQLRNVLLKEIQMIEKQPWSEFQLISPGREQGHPEKQLIPSHINLTIDGADVWEIDATLLKFENKIASGSYGDLYKGTFCSQDVAIKVLKTQHLNEDMWREFSQEVYIMRKVRHKNIVQFIGACTRPPSLCIVTEFMFGGSVYDFLHKQKGSFKLPSLLKVAIDVSKGMNYLHQNDIIHRDLKAANILMDENKVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEHLTPLQAAVGVVQKGLRPTIPSHTYPSLVKLIKRCWHQEPSLRPEFTEIMEILQQIASKVVEKKREILEGRGKRQKEKSI* | 523 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 1477097 | 1491666 | - | Vvi18g154 | Vvi18g154 | 779857 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g154 | 522 | SUPERFAMILY | ACT-like | 132 | 200 | IPR045865 | - | |
Vvi18g154 | 522 | Gene3D | Transferase(Phosphotransferase) domain 1 | 325 | 522 | - | - | |
Vvi18g154 | 522 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 363 | 375 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi18g154 | 522 | ProSiteProfiles | ACT domain profile. | 133 | 208 | IPR002912 | - | |
Vvi18g154 | 522 | SMART | serkin_6 | 246 | 500 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g154 | 522 | Coils | Coil | 183 | 203 | - | - | |
Vvi18g154 | 522 | PANTHER | - | 16 | 504 | - | - | |
Vvi18g154 | 522 | ProSiteProfiles | Protein kinase domain profile. | 246 | 499 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi18g154 | 522 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 16 | 504 | - | - | |
Vvi18g154 | 522 | MobiDBLite | consensus disorder prediction | 75 | 95 | - | - | |
Vvi18g154 | 522 | SUPERFAMILY | Protein kinase-like (PK-like) | 227 | 495 | IPR011009 | - | |
Vvi18g154 | 522 | CDD | STKc_MAP3K-like | 252 | 495 | - | - | |
Vvi18g154 | 522 | PRINTS | Tyrosine kinase catalytic domain signature | 320 | 333 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g154 | 522 | PRINTS | Tyrosine kinase catalytic domain signature | 357 | 375 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g154 | 522 | PRINTS | Tyrosine kinase catalytic domain signature | 403 | 413 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g154 | 522 | PRINTS | Tyrosine kinase catalytic domain signature | 422 | 444 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g154 | 522 | PRINTS | Tyrosine kinase catalytic domain signature | 466 | 488 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi18g154 | 522 | Gene3D | Phosphorylase Kinase; domain 1 | 236 | 323 | - | - | |
Vvi18g154 | 522 | MobiDBLite | consensus disorder prediction | 62 | 95 | - | - | |
Vvi18g154 | 522 | Pfam | Protein tyrosine and serine/threonine kinase | 246 | 495 | IPR001245 | GO:0004672|GO:0006468 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76357 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-74 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g154 | - | - | vvi:100253953 | 1058.13 |